References

Abbott, C. L., Double, M. C., Gales, R., Baker, G. B., Lashko, A., Robertson, C. J. R., and Ryan, P. G. (2006). Molecular provenance analysis for Shy and White-capped Albatrosses killed by fisheries interactions in Australia, New Zealand, and South Africa. Conservation Genetics 7, 531–542.
| CrossRef |

Abdelkrim, J., Pascal, M., Calmet, C., and Samadi, S. (2005). Importance of assessing population genetic structure before eradication of invasive species: examples from insular Norway rat populations. Conservation Biology 19, 1509–1518.
| CrossRef |

Abdelkrim, J., Robertson, B. C., Stanton, J. A. L., and Gemmell, N. J. (2009). Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. BioTechniques 46, 185–192.
| CrossRef | CAS | PubMed |

Allen, G. E., and Dytham, C. (2009). An efficient method for stochastic simulation of biological populations in continuous time. Bio Systems 98, 37–42.
| CrossRef | PubMed |

Allendorf, F., and Luikart, G. (2007). ‘Conservation and the Genetics of Populations.’ (Wiley-Blackwell: Malden, MA.)

Alter, S. E., Rynes, E., and Palumbi, S. R. (2007). DNA evidence for historic population size and past ecosystem impacts of gray whales. Proceedings of the National Academy of Sciences of the United States of America 104, 15 162–15 167.
| CrossRef | CAS |

Axelsson, E., Hultin-Rosenberg, L., Brandstrom, M., Zwahlen, M., Clayton, D. F., and Ellegren, H. (2008). Natural selection in avian protein-coding genes expressed in brain. Molecular Ecology 17, 3008–3017.
| CrossRef | CAS | PubMed |

Backström, N., Fagerberg, S., and Ellegren, H. (2008). Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome. Molecular Ecology 17, 964–980.
| CrossRef | PubMed |

Baker, A. M., Mather, P. B., and Hughes, J. M. (2000). Population genetic structure of Australian Magpies: evidence for regional differences in juvenile dispersal behaviour. Heredity 85, 167–176.
| CrossRef | CAS | PubMed |

Balakrishnan, C. N., and Edwards, S. V. (2009). Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the Zebra Finch (Taeniopygia guttata). Genetics 181, 645–660.
| CrossRef | PubMed |

Balkenhol, N., and Waits, L. P. (2009). Molecular road ecology: exploring the potential of genetics for investigating transportation impacts on wildlife. Molecular Ecology 18, 4151–4164.
| CrossRef | PubMed |

Balkenhol, N., Gugerli, F., Cushman, S. A., Waits, L. P., Coulon, A., Arntzen, J. W., Holderegger, R., and Wagner, H. H. (2009a). Identifying future research needs in landscape genetics: where to from here? Landscape Ecology 24, 455–463.
| CrossRef |

Balkenhol, N., Waits, L. P., and Dezzani, R. J. (2009b). Statistical approaches in landscape genetics: an evaluation of methods for linking landscape and genetic data. Ecography 32, 818–830.
| CrossRef |

Balloux, F. (2001). EASYPOP (version 1.7): a computer program for population genetics simulations. Journal of Heredity 92, 301–302.
| CrossRef | CAS | PubMed |

Banks, S. C., Hoyle, S. D., Horsup, A., Sunnucks, P., and Taylor, A. C. (2003). Demographic monitoring of an entire species (the northern hairy-nosed wombat, Lasiorhinus krefftii) by genetic analysis of non-invasively collected material. Animal Conservation 6, 101–107.
| CrossRef |

Barr, K. R., Lindsay, D. L., Athrey, G., Lance, R. F., Hayden, T. J., Tweddale, S. A., and Leberg, P. L. (2008). Population structure in an endangered songbird: maintenance of genetic differentiation despite high vagility and significant population recovery. Molecular Ecology 17, 3628–3639.
| CrossRef | PubMed |

Beadell, J. S., Gering, E., Austin, J., Dumbacher, J. P., Peirce, M. A., Pratt, T. K., Atkinson, C. T., and Fleischer, R. C. (2004). Prevalence and differential host-specificity of two avian blood parasite genera in the Australo-Papuan region. Molecular Ecology 13, 3829–3844.
| CrossRef | PubMed |

Bean, M. J. (2009). The Endangered Species Act: science, policy, and politics. Annals of the New York Academy of Sciences 1162, 369–391.
| CrossRef | PubMed |

Beaumont, M. A. (1999). Detecting population expansion and decline using microsatellites. Genetics 153, 2013–2029.
| CAS | PubMed |

Beaumont, M. A., and Rannala, B. (2004). The Bayesian revolution in genetics. Nature Reviews. Genetics 5, 251–261.
| CrossRef | CAS | PubMed |

Beck, N. R., Peakall, R., and Heinsohn, R. (2008). Social constraint and an absence of sex-biased dispersal drive fine-scale genetic structure in white-winged choughs. Molecular Ecology 17, 4346–4358.
| CrossRef | CAS | PubMed |

Beckman, J., Banks, S. C., Sunnucks, P., Lill, A., and Taylor, A. C. (2007). Phylogeography and environmental correlates of a cap on reproduction: teat number in a small marsupial, Antechinus agilis. Molecular Ecology 16, 1069–1083.
| CrossRef | CAS | PubMed |

Beerli, P. (2006). Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics 22, 341–345.
| CrossRef | CAS | PubMed |

Beerli, P., and Felsenstein, J. (2001). Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of the National Academy of Sciences of the United States of America 98, 4563–4568.
| CrossRef | CAS | PubMed |

Bekessy, S. A., Wintle, B. A., Gordon, A., Fox, J. C., Chisholm, R., Brown, B., Regan, T., Mooney, N., Read, S. M., and Burgman, M. A. (2009). Modelling human impacts on the Tasmanian Wedge-tailed Eagle (Aquila audax fleayi). Biological Conservation 142, 2438–2448.
| CrossRef |

Bennett, A. F., Radford, J. Q., and Haslem, A. (2006). Properties of land mosaics: implications for nature conservation in agricultural environments. Biological Conservation 133, 250–264.
| CrossRef |

Bernatchez, L., and Duchesne, P. (2000). Individual-based genotype analysis in studies of parentage and population assignment: how many loci, how many alleles? Canadian Journal of Fisheries and Aquatic Sciences 57, 1–12.
| CrossRef |

Berry, O., Tocher, M. D., and Sarre, S. D. (2004). Can assignment tests measure dispersal? Molecular Ecology 13, 551–561.
| CrossRef | PubMed |

Biek, R., Drummond, A. J., and Poss, M. (2006). A virus reveals population structure and recent demographic history of its carnivore host. Science 311, 538–541.
| CrossRef | CAS | PubMed |

Biro, P. A., Post, J. R., and Booth, D. J. (2007). Mechanisms for climate-induced mortality of fish populations in whole-lake experiments. Proceedings of the National Academy of Sciences of the United States of America 104, 9715–9719.
| CrossRef | CAS | PubMed |

Bouzat, J. L., Cheng, H. H., Lewin, H. A., Westemeier, R. L., Brawn, J. D., and Paige, K. N. (1998a). Genetic evaluation of a demographic bottleneck in the Greater Prairie Chicken. Conservation Biology 12, 836–843.
| CrossRef |

Bouzat, J. L., Lewin, H. A., and Paige, K. N. (1998b). The ghost of genetic diversity past: historical DNA analysis of the Greater Prairie Chicken. American Naturalist 152, 1–6.
| CrossRef | CAS | PubMed |

Bowen, M. E., McAlpine, C. A., Seabrook, L. M., House, A. P. N., and Smith, G. C. (2009). The age and amount of regrowth forest in fragmented brigalow landscapes are both important for woodland dependent birds. Biological Conservation 142, 3051–3059.
| CrossRef |

Brattström, O., Wassenaar, L. I., Hobson, K. A., and Akesson, S. (2008). Placing butterflies on the map – testing regional geographical resolution of three stable isotopes in Sweden using the monophagus Peacock Inachis io. Ecography 31, 490–498.
| CrossRef |

Broquet, T., and Petit, E. J. (2009). Molecular estimation of dispersal for ecology and population genetics. Annual Review of Ecology Evolution and Systematics 40, 193–216.
| CrossRef |

Bruggeman, D. J., Jones, M. L., Scribner, K., and Lupi, F. (2009). Relating tradable credits for biodiversity to sustainability criteria in a dynamic landscape. Landscape Ecology 24, 775–790.
| CrossRef |

Burke, T., and Bruford, M. W. (1987). DNA fingerprinting in birds. Nature 327, 149–152.
| CrossRef | CAS | PubMed |

Carnaval, A. C., Hickerson, M. J., Haddad, C. F. B., Rodrigues, M. T., and Moritz, C. (2009). Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science 323, 785–789.
| CrossRef | CAS | PubMed |

Chen, C., Durand, E., Forbes, F., and Francois, O. (2007). Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study. Molecular Ecology Notes 7, 747–756.
| CrossRef |

Clark, J. S. (2005). Why environmental scientists are becoming Bayesians. Ecology Letters 8, 2–14.
| CrossRef |

Clayton, D. F. (2004). Songbird genomics – methods, mechanisms, opportunities, and pitfalls. Annals of the New York Academy of Sciences 1016, 45–60.
| CAS | PubMed |

Clegg, S. M., Degnan, S. M., Moritz, C., Estoup, A., Kikkawa, J., and Owens, I. P. F. (2002). Microevolution in island forms: the roles of drift and directional selection in morphological divergence of a passerine bird. Evolution 56, 2090–2099.
| PubMed |

Cooper, C. B., and Walters, J. R. (2002). Experimental evidence of disrupted dispersal causing decline of an Australian passerine in fragmented habitat. Conservation Biology 16, 471–478.
| CrossRef |

Cooper, C. B., Walters, J. R., and Priddy, J. (2002a). Landscape patterns and dispersal success: simulated population dynamics in the Brown Treecreeper. Ecological Applications 12, 1576–1587.
| CrossRef |

Cooper, C. B., Walters, J. R., and Ford, H. (2002b). Effects of remnant size and connectivity on the response of Brown Treecreepers to habitat fragmentation. Emu 102, 249–256.
| CrossRef |

Coulon, A., Fitzpatrick, J. W., Bowman, R., and Lovette, I. J. (2010). Effects of habitat fragmentation on effective dispersal of Florida Scrub-jays. Conservation Biology 24, 1080–1088.
| PubMed |

Crandall, K. A., Bininda-Emonds, O. R. P., Mace, G. M., and Wayne, R. K. (2000). Considering evolutionary processes in conservation biology. Trends in Ecology & Evolution 15, 290–295.
| CrossRef |

Cullingham, C. I., Pond, B. A., Kyle, C. J., Rees, E. E., Rosatte, R. C., and White, B. N. (2008). Combining direct and indirect genetic methods to estimate dispersal for informing wildlife disease management decisions. Molecular Ecology 17, 4874–4886.
| CrossRef | CAS | PubMed |

Currat, M., Ray, N., and Excoffier, L. (2004). SPLATCHE: a program to simulate genetic diversity taking into account environmental heterogeneity. Molecular Ecology Notes 4, 139–142.
| CrossRef |

Cushman, S. A., and McGarigal, K. (2004). Hierarchical analysis of forest bird species-environment relationships in the Oregon Coast Range. Ecological Applications 14, 1090–1105.
| CrossRef |

Cushman, S. A., McKelvey, K. S., Hayden, J., and Schwartz, M. K. (2006). Gene flow in complex landscapes: testing multiple hypotheses with causal modeling. American Naturalist 168, 486–499.
| CrossRef | PubMed |

Cushman, S. A., McKelvey, K. S., and Schwartz, M. K. (2009). Use of empirically derived source-destination models to map regional conservation corridors. Conservation Biology 23, 368–376.
| CrossRef | PubMed |

DeYoung, R. W., and Honeycutt, R. L. (2005). The molecular toolbox: genetic techniques in wildlife ecology and management. Journal of Wildlife Management 69, 1362–1384.
| CrossRef |

Doerr, V. A. J., Doerr, E. D., and Davies, M. J. (2011). Dispersal behaviour of Brown Treecreepers predicts functional connectivity for other woodland birds. Emu 111, 71–83.
| CrossRef |

Double, M. C., Peakall, R., Beck, N. R., and Cockburn, A. (2005). Dispersal, philopatry, and infidelity: dissecting local genetic structure in Superb Fairy-wrens (Malurus cyaneus). Evolution 59, 625–635.
| CAS | PubMed |

Drechsler, M., Frank, K., Hanski, I., O’Hara, R. B., and Wissel, C. (2003). Ranking metapopulation extinction risk: from patterns in data to conservation management decisions. Ecological Applications 13, 990–998.
| CrossRef |

Driscoll, D. A. (1999). Genetic neighbourhood and effective population size for two endangered frogs. Biological Conservation 88, 221–229.
| CrossRef |

Drummond, A. J., and Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7, 214.
| CrossRef | PubMed |

Duckworth, R. A., and Badyaev, A. V. (2007). Coupling of dispersal and aggression facilitates the rapid range expansion of a passerine bird. Proceedings of the National Academy of Sciences of the United States of America 104, 15 017–15 022.
| CrossRef | CAS |

Durrant, K. L., and Hughes, J. M. (2005). Differing rates of extra-group paternity between two populations of the Australian Magpie (Gymnorhina tibicen). Behavioral Ecology and Sociobiology 57, 536–545.
| CrossRef |

Durrant, K. L., and Hughes, J. M. (2006). Are there correlates of male Australian Magpie Gymnorhina tibicen reproductive success in a population with high rates of extra-group paternity? Ibis 148, 313–320.
| CrossRef |

Dyer, R. J. (2007). Powers of discerning: challenges to understanding dispersal processes in natural populations. Molecular Ecology 16, 4881–4882.
| CrossRef | PubMed |

Dytham, C. (2009). Evolved dispersal strategies at range margins. Proceedings of the Royal Society of London. Series B: Biological Sciences 276, 1407–1413.
| CrossRef |

Epperson, B. K. (2005). Estimating dispersal from short distance spatial autocorrelation. Heredity 95, 7–15.
| CrossRef | CAS | PubMed |

Excoffier, L., and Heckel, G. (2006). Computer programs for population genetics data analysis: a survival guide. Nature Reviews. Genetics 7, 745–758.
| CrossRef | CAS | PubMed |

Excoffier, L., Smouse, P. E., and Quattro, J. M. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes – application to human mitochondrial DNA restriction data. Genetics 131, 479–491.
| CAS | PubMed |

Fahrig, L. (2007). Non-optimal animal movement in human-altered landscapes. Functional Ecology 21, 1003–1015.
| CrossRef |

Fallon, S. M. (2007). Genetic data and the listing of species under the US Endangered Species Act. Conservation Biology 21, 1186–1195.
| CrossRef | PubMed |

Faubet, P., and Gaggiotti, O. E. (2008). A new Bayesian method to identify the environmental factors that influence recent migration. Genetics 178, 1491–1504.
| CrossRef | PubMed |

Faubet, P., Waples, R. S., and Gaggiotti, O. E. (2007). Evaluating the performance of a multilocus Bayesian method for the estimation of migration rates. Molecular Ecology 16, 1149–1166.
| CrossRef | PubMed |

Ford, H. A. (2011). The causes of decline of birds of eucalypt woodlands: advances in our knowledge over the last 10 years. Emu 111, 1–9.
| CrossRef |

Ford, H. A., Walters, J. R., Cooper, C. B., Debus, S. J. S., and Doerr, V. A. J. (2009). Extinction debt or habitat change? – Ongoing losses of woodland birds in north-eastern New South Wales, Australia. Biological Conservation 142, 3182–3190.
| CrossRef |

Frankham, R. (1995). Effective population size/adult population size ratios in wildlife – a review. Genetical Research 66, 95–107.
| CrossRef |

Frankham, R. (1996). Relationship of genetic variation to population size in wildlife. Conservation Biology 10, 1500–1508.
| CrossRef |

Frankham, R. (2005a). Genetics and extinction. Biological Conservation 126, 131–140.
| CrossRef |

Frankham, R. (2005b). Stress and adaptation in conservation genetics. Journal of Evolutionary Biology 18, 750–755.
| CrossRef | CAS | PubMed |

Frankham, R., Ballou, J. D., and Briscoe, D. A. (2002). ‘Introduction to Conservation Genetics.’ (Cambridge University Press: Cambridge, UK.)

Freeman-Gallant, C. R., Meguerdichian, M., Wheelwright, N. T., and Sollecito, S. V. (2003). Social pairing and female mating fidelity predicted by restriction fragment length polymorphism similarity at the major histocompatibility complex in a songbird. Molecular Ecology 12, 3077–3083.
| CrossRef | PubMed |

Garant, D., Kruuk, L. E. B., Wilkin, T. A., McCleery, R. H., and Sheldon, B. C. (2005). Evolution driven by differential dispersal within a wild bird population. Nature 433, 60–65.
| CrossRef | CAS | PubMed |

Garant, D., Hadfield, J. D., Kruuk, L. E. B., and Sheldon, B. C. (2008). Stability of genetic variance and covariance for reproductive characters in the face of climate change in a wild bird population. Molecular Ecology 17, 179–188.
| CrossRef | PubMed |

Gardner, J. L., Heinsohn, R., and Joseph, L. (2009). Shifting latitudinal clines in avian body size correlate with global warming in Australian passerines. Proceedings of the Royal Society of London. Series B. Biological Sciences 276, 3845–3852.
| CrossRef |

Garrick, R. C., Rowell, D. M., Simmons, C. S., Hillis, D. M., and Sunnucks, P. (2008). Fine-scale phylogeographic congruence despite demographic incongruence in two low-mobility saproxylic springtails. Evolution 62, 1103–1118.
| CrossRef | PubMed |

Garza, J. C., and Williamson, E. G. (2001). Detection of reduction in population size using data from microsatellite loci. Molecular Ecology 10, 305–318.
| CrossRef | CAS | PubMed |

Geffen, E., Anderson, M. J., and Wayne, R. K. (2004). Climate and habitat barriers to dispersal in the highly mobile grey wolf. Molecular Ecology 13, 2481–2490.
| CrossRef | CAS | PubMed |

Gilligan, D. M., Briscoe, D. A., and Frankham, R. (2005). Comparative losses of quantitative and molecular genetic variation in finite populations of Drosophila melanogaster. Genetical Research 85, 47–55.
| CrossRef | CAS | PubMed |

Goossens, B., Chikhi, L., Ancrenaz, M., Lackman-Ancrenaz, I., Andau, P., and Bruford, M. W. (2006). Genetic signature of anthropogenic population collapse in orang-utans. PLoS Biology 4, e25.
| CrossRef | PubMed |

Grueber, C. E., and Jamieson, I. G. (2008). Quantifying and managing the loss of genetic variation in a free-ranging population of Takahe through the use of pedigrees. Conservation Genetics 9, 645–651.
| CrossRef |

Guillot, G., Leblois, R., Coulon, A., and Frantz, A. C. (2009). Statistical methods in spatial genetics. Molecular Ecology 18, 4734–4756.
| CrossRef | PubMed |

Hadfield, J. D., Richardson, D. S., and Burke, T. (2006). Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework. Molecular Ecology 15, 3715–3730.
| CrossRef | CAS | PubMed |

Hall, M. L., and Peters, A. (2009). Do male paternity guards ensure female fidelity in a duetting fairy-wren? Behavioral Ecology 20, 222–228.
| CrossRef |

Hansson, B., Bensch, S., and Hasselquist, D. (2004). Lifetime fitness of short- and long-distance dispersing Great Reed Warblers. Evolution 58, 2546–2557.
| PubMed |

Hardy, O. J., Charbonnel, N., Freville, H., and Heuertz, M. (2003). Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics 163, 1467–1482.
| CAS | PubMed |

Hartig, F., and Drechsler, M. (2009). Smart spatial incentives for market-based conservation. Biological Conservation 142, 779–788.
| CrossRef |

Hastings, A. (1993). Complex interactions between dispersal and dynamics – lessons from coupled logistic equations. Ecology 74, 1362–1372.
| CrossRef |

Hedrick, P. W. (2005). A standardized genetic differentiation measure. Evolution 59, 1633–1638.
| CAS | PubMed |

Hellborg, L., and Ellegren, H. (2004). Low levels of nucleotide diversity in mammalian Y chromosomes. Molecular Biology and Evolution 21, 158–163.
| CrossRef | CAS | PubMed |

Heller, R., and Siegismund, H. R. (2009). Relationship between three measures of genetic differentiation G _ST, D _EST and G′_ST: how wrong have we been? Molecular Ecology 18, 2080–2083.
| CrossRef | CAS | PubMed |

Hey, J., and Nielsen, R. (2004). Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167, 747–760.
| CrossRef | CAS | PubMed |

Hillier, L. W., Miller, W., Birney, E., Warren, W., Hardison, R. C., Ponting, C. P., Bork, P., Burt, D. W., et al (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695–716.
| CrossRef | CAS | PubMed |

Hoffmann, A. A., and Daborn, P. J. (2007). Towards genetic markers in animal populations as biomonitors for human-induced environmental change. Ecology Letters 10, 63–76.
| CrossRef | PubMed |

Hofreiter, M., and Stewart, J. (2009). Ecological change, range fluctuations and population dynamics during the Pleistocene. Current Biology 19, R584–R594.
| CrossRef | CAS | PubMed |

Hogan, F. E., Cooke, R., Burridge, C. P., and Norman, J. A. (2008). Optimizing the use of shed feathers for genetic analysis. Molecular Ecology Resources 8, 561–567.
| CrossRef | CAS |

Holderegger, R., and Wagner, H. H. (2008). Landscape genetics. Bioscience 58, 199–207.
| CrossRef |

Inger, R., and Bearhop, S. (2008). Applications of stable isotope analyses to avian ecology. Ibis 150, 447–461.
| CrossRef |

Jackson, J. A., Patenaude, N. J., Carroll, E. L., and Baker, C. S. (2008). How few whales were there after whaling? Inference from contemporary mtDNA diversity. Molecular Ecology 17, 236–251.
| CrossRef | CAS | PubMed |

Johnson, J. B., Peat, S. M., and Adams, B. J. (2009). Where’s the ecology in molecular ecology? Oikos 118, 1601–1609.
| CrossRef |

Jombart, T., Devillard, S., Dufour, A. B., and Pontier, D. (2008). Revealing cryptic spatial patterns in genetic variability by a new multivariate method. Heredity 101, 92–103.
| CrossRef | CAS | PubMed |

Joost, S., Bonin, A., Bruford, M. W., Despres, L., Conord, C., Erhardt, G., and Taberlet, P. (2007). A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation. Molecular Ecology 16, 3955–3969.
| CrossRef | CAS | PubMed |

Jorde, P. E., and Ryman, N. (1995). Temporal allele frequency change and estimation of effective size in populations with overlapping generations. Genetics 139, 1077–1090.
| CAS | PubMed |

Joseph, L., and Omland, K. E. (2009). Phylogeography: its development and impact in Australo-Papuan ornithology with special reference to paraphyly in Australian birds. Emu 109, 1–23.
| CrossRef |

Joseph, L., Dolman, G., Donnellan, S., Saint, K. M., Berg, M. L., and Bennett, A. T. D. (2008). Where and when does a ring start and end? Testing the ring-species hypothesis in a species complex of Australian parrots. Proceedings of the Royal Society of London. Series B. Biological Sciences 275, 2431–2440.
| CrossRef |

Karaiskou, N., Buggiotti, L., Leder, E., and Primmer, C. R. (2008). High degree of transferability of 86 newly developed Zebra Finch EST-linked microsatellite markers in 8 bird species. Journal of Heredity 99, 688–693.
| CrossRef | CAS | PubMed |

Kavanagh, R. P., Stanton, M. A., and Herring, M. W. (2007). Eucalypt plantings on farms benefit woodland birds in south-eastern Australia. Austral Ecology 32, 635–650.
| CrossRef |

Kearney, M., and Porter, W. (2009). Mechanistic niche modelling: combining physiological and spatial data to predict species’ ranges. Ecology Letters 12, 334–350.
| CrossRef | PubMed |

Kearney, M., Briscoe, N. J., Karoly, D. J., Porter, W. P., Norgate, M., and Sunnucks, P. (2010). Early emergence in a butterfly causally linked to anthropogenic warming. Biology Letters 6, 674–677.
| CrossRef | PubMed |

Keller, L. F. (1998). Inbreeding and its fitness effects in an insular population of Song Sparrows (Melospiza melodia). Evolution 52, 240–250.
| CrossRef |

Keller, L. F., and Waller, D. M. (2002). Inbreeding effects in wild populations. Trends in Ecology & Evolution 17, 230–241.
| CrossRef |

Keller, L. F., Arcese, P., Smith, J. N. M., Hochachka, W. M., and Stearns, S. C. (1994). Selection against inbred Song Sparrows during a natural population bottleneck. Nature 372, 356–357.
| CrossRef | CAS | PubMed |

Keller, L. F., Jeffery, K. J., Arcese, P., Beaumont, M. A., Hochachka, W. M., Smith, J. N. M., and Bruford, M. W. (2001). Immigration and the ephemerality of a natural population bottleneck: evidence from molecular markers. Proceedings of the Royal Society of London. Series B. Biological Sciences 268, 1387–1394.
| CrossRef | CAS |

Kimball, R. T., Braun, E. L., Barker, F. K., Bowie, R. C. K., Braun, M. J., Chojnowski, J. L., Hackett, S. J., Han, K. L., et al (2009). A well-tested set of primers to amplify regions spread across the avian genome. Molecular Phylogenetics and Evolution 50, 654–660.
| CrossRef | CAS | PubMed |

Kingman, J. F. C. (1982). The coalescent. Stochastic Processes and their Applications 13, 235–248.
| CrossRef |

Knowles, L. L. (2009). Statistical phylogeography. Annual Review of Ecology Evolution and Systematics 40, 593–612.
| CrossRef |

Korsten, P., Mueller, J. C., Hermannstädter, C., Bouwman, K. M., Dingemanse, N. J., Drent, P. J., Liedvogel, M., Mattysen, E., et al (2010). Association between DRD4 gene polymorphism and personality variation in Great Tits: a test across four wild populations. Molecular Ecology 19, 832–843.
| CrossRef | CAS | PubMed |

Kuhner, M. K. (2009). Coalescent genealogy samplers: windows into population history. Trends in Ecology & Evolution 24, 86–93.
| CrossRef |

Lada, H., Mac Nally, R., and Taylor, A. C. (2008). Distinguishing past from present gene flow along and across a river: the case of the carnivorous marsupial (Antechinus flavipes) on southern Australian floodplains. Conservation Genetics 9, 569–580.
| CrossRef |

Laikre, L., Nilsson, T., Primmer, C. R., Ryman, N., and Allendorf, F. W. (2009). Importance of genetics in the interpretation of favourable conservation status. Conservation Biology 23, 1378–1381.
| CrossRef | PubMed |

Landguth, E. L., and Cushman, S. A. (2010). CDPOP: a spatially explicit cost distance population genetics program. Molecular Ecology Resources 10, 156–161.
| CrossRef | CAS |

Langmore, N. E., Adcock, G. J., and Kilner, R. M. (2007). The spatial organization and mating system of Horsfield’s Bronze-Cuckoos, Chalcites basalis. Animal Behaviour 74, 403–412.
| CrossRef |

Latch, E. K., Dharmarajan, G., Glaubitz, J. C., and Rhodes, O. E. (2006). Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics 7, 295–302.
| CrossRef |

Lee, J. Y., and Edwards, S. V. (2008). Divergence across Australia’s Carpentarian barrier: statistical phylogeography of the Red-backed Fairy-wren (Malurus melanocephalus). Evolution 62, 3117–3134.
| CrossRef | PubMed |

Lehtonen, P. K., Laaksonen, T., Artemyev, A. V., Belskii, E., Both, C., Bures, S., Bushuev, A. V., Krams, I., et al (2009). Geographic patterns of genetic differentiation and plumage colour variation are different in the Pied Flycatcher (Ficedula hypoleuca). Molecular Ecology 18, 4463–4476.
| CrossRef | PubMed |

Levin, N., McAlpine, C., Phinn, S., Price, B., Pullar, D., Kavanagh, R. P., and Law, B. S. (2009). Mapping forest patches and scattered trees from SPOT images and testing their ecological importance for woodland birds in a fragmented agricultural landscape. International Journal of Remote Sensing 30, 3147–3169.
| CrossRef |

Lodé, T., and Peltier, D. (2005). Genetic neighbourhood and effective population size in the endangered European mink Mustela lutreola. Biodiversity and Conservation 14, 251–259.
| CrossRef |

Lowe, W. H. (2009). What drives long-distance dispersal? A test of theoretical predictions. Ecology 90, 1456–1462.
| CrossRef | PubMed |

Lowe, W. H., and Allendorf, F. W. (2010). What can genetics tell us about population connectivity? Molecular Ecology 19, 3038–3051.
| CrossRef | PubMed |

Luikart, G., Ryman, N., Tallmon, D. A., Schwartz, M. K., and Allendorf, F. W. (2010). Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches. Conservation Genetics 11, 355–373.
| CrossRef | CAS |

Mac Nally, R., Bennett, A. F., Thomson, J. R., Radford, J. Q., Unmack, G., Horrocks, G., and Vesk, P. A. (2009). Collapse of an avifauna: climate change appears to exacerbate habitat loss and degradation. Diversity & Distributions 15, 720–730.
| CrossRef |

Manel, S., Schwartz, M. K., Luikart, G., and Taberlet, P. (2003). Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology & Evolution 18, 189–197.
| CrossRef |

Manel, S., Gaggiotti, O. E., and Waples, R. S. (2005). Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology & Evolution 20, 136–142.
| CrossRef |

Markert, J. A., Grant, P. R., Grant, B. R., Keller, L. F., Coombs, J. L., and Petren, K. (2004). Neutral locus heterozygosity, inbreeding, and survival in Darwin’s ground finches (Geospiza fortis and G. scandens). Heredity 92, 306–315.
| CrossRef | CAS | PubMed |

McRae, B. H., and Beier, P. (2007). Circuit theory predicts gene flow in plant and animal populations. Proceedings of the National Academy of Sciences of the United States of America 104, 19 885–19 890.
| CrossRef | CAS |

McRae, B. H., Schumaker, N. H., McKane, R. B., Busing, R. T., Solomon, A. M., and Burdick, C. A. (2008). A multi-model framework for simulating wildlife population response to land-use and climate change. Ecological Modelling 219, 77–91.
| CrossRef |

Miller, H. C., and Lambert, D. M. (2004). Genetic drift outweighs balancing selection in shaping post-bottleneck major histocompatibility complex variation in New Zealand robins (Petroicidae). Molecular Ecology 13, 3709–3721.
| CrossRef | CAS | PubMed |

Murphy, S. A., Double, M. C., and Legge, S. M. (2007). The phylogeography of Palm Cockatoos, Probosciger aterrimus, in the dynamic Australo-Papuan region. Journal of Biogeography 34, 1534–1545.
| CrossRef |

Murphy, M. A., Evans, J. S., Cushman, S. A., and Storfer, A. (2008). Representing genetic variation as continuous surfaces: an approach for identifying spatial dependency in landscape genetic studies. Ecography 31, 685–697.
| CrossRef |

Naurin, S., Bensch, S., Hansson, B., Johansson, T., Clayton, D. F., Albrekt, A. S., von Schantz, T., and Hasselquist, D. (2008). A microarray for large-scale genomic and transcriptional analyses of the Zebra Finch (Taeniopygia guttata) and other passerines. Molecular Ecology Resources 8, 275–281.
| CrossRef | CAS |

Neigel, J. E. (2002). Is F _ST obsolete? Conservation Genetics 3, 167–173.
| CrossRef | CAS |

Nichols, R. A., Bruford, M. W., and Groombridge, J. J. (2001). Sustaining genetic variation in a small population: evidence from the Mauritius Kestrel. Molecular Ecology 10, 593–602.
| CrossRef | CAS | PubMed |

Nieminen, M., Singer, M. C., Fortelius, W., Schops, K., and Hanski, I. (2001). Experimental confirmation that inbreeding depression increases extinction risk in butterfly populations. American Naturalist 157, 237–244.
| CrossRef | CAS | PubMed |

Norgate, M., Chamings, J., Pavlova, A., Bull, J. K., Murray, N. D., and Sunnucks, P. (2009). Mitochondrial DNA indicates late Pleistocene divergence of populations of Heteronympha merope, an emerging model in environmental change biology. PLoS ONE 4, e7950.
| CrossRef | PubMed |

O’Grady, J. J., Brook, B. W., Reed, D. H., Ballou, J. D., Tonkyn, D. W., and Frankham, R. (2006). Realistic levels of inbreeding depression strongly affect extinction risk in wild populations. Biological Conservation 133, 42–51.
| CrossRef |

Okello, J. B. A., Wittemyer, G., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I., and Siegismund, H. R. (2008). Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants. Molecular Ecology 17, 3788–3799.
| CrossRef | CAS | PubMed |

Orell, M., Lahti, K., Koivula, K., Rytkonen, S., and Welling, P. (1999). Immigration and gene flow in a northern Willow Tit (Parus montanus) population. Journal of Evolutionary Biology 12, 283–295.
| CrossRef |

Paetkau, D., Slade, R., Burden, M., and Estoup, A. (2004). Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology 13, 55–65.
| CrossRef | CAS | PubMed |

Painter, J. N., Crozier, R. H., Poiani, A., Robertson, R. J., and Clarke, M. F. (2000). Complex social organization reflects genetic structure and relatedness in the cooperatively breeding Bell Miner, Manorina melanophrys. Molecular Ecology 9, 1339–1347.
| CrossRef | CAS | PubMed |

Palkovacs, E. P., Oppenheimer, A. J., Gladyshev, E., Toepfer, J. E., Amato, G., Chase, T., and Caccone, A. (2004). Genetic evaluation of a proposed introduction: the case of the Greater Prairie Chicken and the extinct Heath Hen. Molecular Ecology 13, 1759–1769.
| CrossRef | CAS | PubMed |

Palsbøll, P. J., Berube, M., and Allendorf, F. W. (2007). Identification of management units using population genetic data. Trends in Ecology & Evolution 22, 11–16.
| CrossRef |

Palstra, F. P., and Ruzzante, D. E. (2008). Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Molecular Ecology 17, 3428–3447.
| CrossRef | PubMed |

Paquette, S. R., and Lapointe, F. J. (2009). A statistical procedure to assess the significance level of barriers to gene flow. Journal of Genetics and Genomics 36, 685–693.
| CrossRef | PubMed |

Pavlacky, D. C., Goldizen, A. W., Prentis, P. J., Nicholls, J. A., and Lowe, A. J. (2009). A landscape genetics approach for quantifying the relative influence of historic and contemporary habitat heterogeneity on the genetic connectivity of a rainforest bird. Molecular Ecology 18, 2945–2960.
| CrossRef | PubMed |

Peakall, R., and Smouse, P. E. (2006). GenAlEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288–295.
| CrossRef |

Pearse, D. E., and Crandall, K. A. (2004). Beyond F _ST: analysis of population genetic data for conservation. Conservation Genetics 5, 585–602.
| CrossRef | CAS |

Peery, M. Z., Beissinger, S. R., House, R. F., Berube, M., Hall, L. A., Sellas, A., and Palsboll, P. J. (2008). Characterizing source-sink dynamics with genetic parentage assignments. Ecology 89, 2746–2759.
| CrossRef | PubMed |

Pillay, K., Dawson, D. A., Horsburgh, G. J., Perrin, M. R., Burke, T., and Taylor, T. D. (2010). Twenty-two polymorphic microsatellite loci aimed at detecting illegal trade in the Cape Parrot, Poicephalus robustus (Psittacidae, Aves). Molecular Ecology Resources 10, 142–149.
| CrossRef | CAS |

Pimm, S. L. (2008). Biodiversity: climate change or habitat loss – which will kill more species? Current Biology 18, R117–R119.
| CrossRef | CAS | PubMed |

Piry, S., Luikart, G., and Cornuet, J. M. (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity 90, 502–503.
| CrossRef |

Piry, S., Alapetite, A., Cornuet, J.-M., Paetkau, D., Baudouin, L., and Estoup, A. (2004). GeneClass2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity 95, 536–539.
| CrossRef | CAS | PubMed |

Põldmaa, T., Montgomerie, R., and Boag, P. (1995). Mating system of the cooperatively breeding Noisy Miner Manorina melanocephala, as revealed by DNA profiling. Behavioral Ecology and Sociobiology 37, 137–143.
| CrossRef |

Porlier, M., Belisle, M., and Garant, D. (2009). Non-random distribution of individual genetic diversity along an environmental gradient. Philosophical Transactions of the Royal Society of London. Series B. Biological Sciences 364, 1543–1554.
| CrossRef |

Primmer, C. R. (2009). From conservation genetics to conservation genomics. Annals of the New York Academy of Sciences 1162, 357–368.
| CrossRef | CAS | PubMed |

Pritchard, J. K., Stephens, M., and Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155, 945–959.
| CAS | PubMed |

Radford, J. Q., and Bennett, A. F. (2004). Thresholds in landscape parameters: occurrence of the White-browed Treecreeper Climacteris affinis in Victoria, Australia. Biological Conservation 117, 375–391.
| CrossRef |

Radford, J. Q., and Bennett, A. F. (2007). The relative importance of landscape properties for woodland birds in agricultural environments. Journal of Applied Ecology 44, 737–747.
| CrossRef |

Radford, J. Q., Bennett, A. F., and Cheers, G. J. (2005). Landscape-level thresholds of habitat cover for woodland-dependent birds. Biological Conservation 124, 317–337.
| CrossRef |

Reed, D. H., and Frankham, R. (2003). Correlation between fitness and genetic diversity. Conservation Biology 17, 230–237.
| CrossRef |

Reid, J. M., Arcese, P., and Keller, L. F. (2003). Inbreeding depresses immune response in Song Sparrows (Melospiza melodia): direct and inter-generational effects. Proceedings of the Royal Society of London. Series B. Biological Sciences 270, 2151–2157.
| CrossRef |

Robertson, O. J., and Radford, J. Q. (2009). Gap-crossing decisions of forest birds in a fragmented landscape. Austral Ecology 34, 435–446.
| CrossRef |

Rollins, L. A., Woolnough, A. P., and Sherwin, W. B. (2006). Population genetic tools for pest management: a review. Wildlife Research 33, 251–261.
| CrossRef |

Roman, J., and Palumbi, S. R. (2003). Whales before whaling in the North Atlantic. Science 301, 508–510.
| CrossRef | CAS | PubMed |

Rosauer, D., Laffan, S. W., Crisp, M. D., Donnellan, S. C., and Cook, L. G. (2009). Phylogenetic endemism: a new approach for identifying geographical concentrations of evolutionary history. Molecular Ecology 18, 4061–4072.
| CrossRef | PubMed |

Rousset, F. (1997). Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145, 1219–1228.
| CAS | PubMed |

Rousset, F. (2000). Genetic differentiation between individuals. Journal of Evolutionary Biology 13, 58–62.
| CrossRef |

Rousset, F. (2008). Dispersal estimation: demystifying Moran’s I. Heredity 100, 231–232.
| CrossRef | CAS | PubMed |

Saccheri, I., Kuussaari, M., Kankare, M., Vikman, P., Fortelius, W., and Hanski, I. (1998). Inbreeding and extinction in a butterfly metapopulation. Nature 392, 491–494.
| CrossRef | CAS |

Saether, B. E., Grotan, V., Engen, S., Noble, D. G., and Freckleton, R. P. (2009). Critical parameters for predicting population fluctuations of some British passerines. Journal of Animal Ecology 78, 1063–1075.
| CrossRef | PubMed |

Scribner, K. T., Blanchong, J. A., Bruggeman, D. J., Epperson, B. K., Lee, C. Y., Pan, Y. W., Shorey, R. I., Prince, H. H., et al (2005). Geographical genetics: conceptual foundations and empirical applications of spatial genetic data in wildlife management. Journal of Wildlife Management 69, 1434–1453.
| CrossRef |

Selkoe, K. A., and Toonen, R. J. (2006). Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters 9, 615–629.
| CrossRef | PubMed |

Selkoe, K. A., Henzler, C. M., and Gaines, S. D. (2008). Seascape genetics and the spatial ecology of marine populations. Fish and Fisheries 9, 363–377.
| CrossRef |

Selwood, K., Mac Nally, R., and Thomson, J. R. (2009). Native bird breeding in a chronosequence of revegetated sites. Oecologia 159, 435–446.
| CrossRef | PubMed |

Simmons, J. M., Sunnucks, P., Taylor, A. C., and van der Ree, R. (2010). Beyond road-kill, radiotracking, recapture and F_ST – a review of some genetic methods to improve understanding of the influence of roads on wildlife. Ecology and Society 15, 9. Available at http://www.ecologyandsociety.org/vol15/iss1/art9/ [Verified 15 September 2010].

Slatkin, M. (2005). Seeing ghosts: the effect of unsampled populations on migration rates estimated for sampled populations. Molecular Ecology 14, 67–73.
| CrossRef | PubMed |

Sloane, M. A., Sunnucks, P., Alpers, D., Beheregaray, L. B., and Taylor, A. C. (2000). Highly reliable genetic identification of individual northern hairy-nosed wombats from single remotely collected hairs: a feasible censusing method. Molecular Ecology 9, 1233–1240.
| CAS | PubMed |

Sommer, S. (2003). Effects of habitat fragmentation and changes of dispersal behaviour after a recent population decline on the genetic variability of noncoding and coding DNA of a monogamous Malagasy rodent. Molecular Ecology 12, 2845–2851.
| CrossRef | CAS | PubMed |

Storfer, A., Murphy, M. A., Evans, J. S., Goldberg, C. S., Robinson, S., Spear, S. F., Dezzani, R., Delmelle, E., et al (2007). Putting the ‘landscape’ in landscape genetics. Heredity 98, 128–142.
| CrossRef | CAS | PubMed |

Storz, J. F., and Beaumont, M. A. (2002). Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model. Evolution 56, 154–166.
| CAS | PubMed |

Stow, A. J., and Sunnucks, P. (2004a). High mate and site fidelity in Cunningham’s skinks (Egernia cunninghami) in natural and fragmented habitat. Molecular Ecology 13, 419–430.
| CrossRef | CAS | PubMed |

Stow, A. J., and Sunnucks, P. (2004b). Inbreeding avoidance in Cunningham’s skinks (Egernia cunninghami) in natural and fragmented habitat. Molecular Ecology 13, 443–447.
| CrossRef | CAS | PubMed |

Stow, A. J., Sunnucks, P., Briscoe, D. A., and Gardener, M. G. (2001). The impact of habitat fragmentation on dispersal in Cunningham’s skink (Egernia cunninghami): evidence from allelic and genotypic analyses of microsatellites. Molecular Ecology 10, 867–878.
| CrossRef | CAS | PubMed |

Strand, A. E., and Niehaus, J. M. (2007). KERNELPOP, a spatially explicit population genetic simulation engine. Molecular Ecology Notes 7, 969–973.
| CrossRef |

Sumner, J., Rousset, F., Estoup, A., and Moritz, C. (2001). ‘Neighbourhood’ size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) using individual genetic and demographic methods. Molecular Ecology 10, 1917–1927.
| CrossRef | CAS | PubMed |

Sunnucks, P. (2000). Efficient genetic markers for population biology. Trends in Ecology & Evolution 15, 199–203.
| CrossRef |

Sunnucks, P., and Taylor, A. C. (2008) The application of genetic markers to landscape management. In ‘Landscape Analysis and Visualisation: Spatial Models for Natural Resource Management and Planning’. (Eds C. Pettit, W. Cartwright, I. Bishop, K. Lowell, D. Pullar and D. Duncan.) pp. 211–234. (Springer: Berlin.)

Sutherland, W. J., Pullin, A. S., Dolman, P. M., and Knight, T. M. (2004). The need for evidence-based conservation. Trends in Ecology & Evolution 19, 305–308.
| CrossRef |

Szabo, J. K., Vesk, P. A., Baxter, P. W. J., and Possingham, H. P. (2011). Paying the extinction debt: declining woodland birds in the Mount Lofty Ranges, South Australia. Emu 111, 59–70.
| CrossRef |

Tallmon, D. A., Koyuk, A., Luikart, G., and Beaumont, M. A. (2008). ONeSAMP: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources 8, 299–301.
| CrossRef |

Tittler, R., Fahrig, L., and Villard, M. A. (2006). Evidence of large-scale source–sink dynamics and long-distance dispersal among Wood Thrush populations. Ecology 87, 3029–3036.
| CrossRef | PubMed |

Tittler, R., Villard, M. A., and Fahrig, L. (2009). How far do songbirds disperse? Ecography 32, 1051–1061.
| CrossRef |

Toon, A., Mather, P. B., Baker, A. M., Durrant, K. L., and Hughes, J. M. (2007). Pleistocene refugia in an arid landscape: analysis of a widely distributed Australian passerine. Molecular Ecology 16, 2525–2541.
| CrossRef | CAS | PubMed |

Trakhtenbrot, A., Nathan, R., Perry, G., and Richardson, D. M. (2005). The importance of long-distance dispersal in biodiversity conservation. Diversity & Distributions 11, 173–181.
| CrossRef |

Turner, T. F., Wares, J. P., and Gold, J. R. (2002). Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, estuarine-dependent marine fish (Sciaenops ocellatus). Genetics 162, 1329–1339.
| PubMed |

van Houtan, K. S., Pimm, S. L., Halley, J. M., Bierregaard, R. O., and Lovejoy, T. E. (2007). Dispersal of Amazonian birds in continuous and fragmented forest. Ecology Letters 10, 219–229.
| CrossRef | PubMed |

Vandewoestijne, S., Schtickzelle, N., and Baguette, M. (2008). Positive correlation between genetic diversity and fitness in a large, well-connected metapopulation. BMC Biology 6, 46.
| CrossRef | PubMed |

Vekemans, X., and Hardy, O. J. (2004). New insights from fine-scale spatial genetic structure analyses in plant populations. Molecular Ecology 13, 921–935.
| CrossRef | CAS | PubMed |

Vernesi, C., and Bruford, M. W. (2009). Recent developments in molecular tools for conservation. In ‘Population Genetics for Animal Conservation’. (Eds G. Bertorelle, M. W. Bruford, H. C. Hauffe, A. Rizzoli and C. Vernesi.) pp. 313–336. (Cambridge University Press: Cambridge, UK.)

Walker, F. M., Sunnucks, P., and Taylor, A. C. (2006). Genotyping of ‘captured’ hairs reveals burrow-use and ranging behavior of southern hairy-nosed wombats. Journal of Mammalogy 87, 690–699.
| CrossRef |

Walker, F. M., Taylor, A. C., and Sunnucks, P. (2007). Does soil type drive social organization in southern hairy-nosed wombats? Molecular Ecology 16, 199–208.
| CrossRef | PubMed |

Walker, F. M., Sunnucks, P., and Taylor, A. C. (2008a). Evidence for habitat fragmentation altering within-population processes in wombats. Molecular Ecology 17, 1674–1684.
| CrossRef | PubMed |

Walker, F. M., Taylor, A. C., and Sunnucks, P. (2008b). Female dispersal and male kinship-based association in southern hairy-nosed wombats (Lasiorhinus latifrons). Molecular Ecology 17, 1361–1374.
| CrossRef | PubMed |

Wang, J. L. (2004). Application of the one-migrant-per-generation rule to conservation and management. Conservation Biology 18, 332–343.
| CrossRef |

Wang, J. L. (2009). A new method for estimating effective population sizes from a single sample of multilocus genotypes. Molecular Ecology 18, 2148–2164.
| CrossRef | PubMed |

Waples, R. S., and Do, C. (2008). LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources 8, 753–756.
| CrossRef |

Waples, R. S., and Gaggiotti, O. (2006). What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology 15, 1419–1439.
| CrossRef | CAS | PubMed |

Waples, R. S., Punt, A. E., and Cope, J. M. (2008). Integrating genetic data into management of marine resources: how can we do it better? Fish and Fisheries 9, 423–449.
| CrossRef |

Watson, D. M. (2011). A productivity-based explanation for woodland bird declines: poorer soils yield less food. Emu 111, 10–18.
| CrossRef |

Watts, P. C., Rousset, F., Saccheri, I. J., Leblois, R., Kemp, S. J., and Thompson, D. J. (2007). Compatible genetic and ecological estimates of dispersal rates in insect (Coenagrion mercuriale : Odonata : Zygoptera) populations: analysis of ‘neighbourhood size’ using a more precise estimator. Molecular Ecology 16, 737–751.
| CrossRef | PubMed |

Westemeier, R. L., Brawn, J. D., Simpson, S. A., Esker, T. L., Jansen, R. W., Walk, J. W., Kershner, E. L., Bouzat, J. L., and Paige, K. N. (1998). Tracking the long-term decline and recovery of an isolated population. Science 282, 1695–1698.
| CrossRef | CAS | PubMed |

Westerdahl, H., Waldenstrom, J., Hansson, B., Hasselquist, D., von Schantz, T., and Bensch, S. (2005). Associations between malaria and MHC genes in a migratory songbird. Proceedings of the Royal Society of London. Series B. Biological Sciences 272, 1511–1518.
| CrossRef | CAS |

Wilding, C. S., Butlin, R. K., and Grahame, J. (2001). Differential gene exchange between parapatric morphs of Littorina saxatilis detected using AFLP markers. Journal of Evolutionary Biology 14, 611–619.
| CrossRef | CAS |

Willi, Y., van Buskirk, J., and Hoffmann, A. A. (2006). Limits to the adaptive potential of small populations. Annual Review of Ecology Evolution and Systematics 37, 433–458.
| CrossRef |

Wilson, G. A., and Rannala, B. (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163, 1177–1191.
| PubMed |

Wilson, I. J., Weale, M. E., and Balding, D. J. (2003). Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. Journal of the Royal Statistical Society. Series A. Statistics in Society 166, 155–188.
| CrossRef |

Young, A. G., Brown, A. H. D., Murray, B. G., Thrall, P. H., and Miller, C. H. (2000). Genetic erosion, restricted mating and reduced viability in fragmented populations of the endangered grassland herb Rutidosis leptorrhynchoides. In ‘Genetics, Demography and Viability of Fragmented Populations. Vol. 4’. (Eds A. G. Young and G. M. Clarke.) pp. 335–359. (Cambridge University Press: Cambridge, UK.)

Zellmer, A. J., and Knowles, L. L. (2009). Disentangling the effects of historic vs. contemporary landscape structure on population genetic divergence. Molecular Ecology 18, 3593–3602.
| CrossRef | CAS | PubMed |