Most of New Zealand’s herpetofauna species are threatened and in decline. Yet, little is known about their basic physiology and endocrinology. This study examined plasma corticosterone (CORT) concentrations in a threatened endemic New Zealand reptile, the Duvaucel’s gecko, in relation to season, sex, body temperature, body condition and female reproductive condition (pregnant versus non-pregnant). In addition, seasonal plasma CORT concentrations were compared between captive geckos from a breeding facility and a wild population to determine whether concentrations of CORT were chronically elevated in captive lizards. Plasma CORT concentrations showed significant seasonal variation, but were not related to sex, body temperature, body condition or female reproductive condition. Geckos, which successfully bred in captivity each year, did not exhibit chronically elevated plasma CORT levels but showed an elevation of plasma CORT concentrations in summer compared with wild geckos. Information on basal CORT concentrations in species of conservation concern can be beneficial for improving their management and can aid in identifying and evaluating stress-related changes in hormone patterns of individuals and chronic stress, which is particularly relevant for threatened species breeding programs.