References

Allen, G. R. (1974). The marine crocodile, Crocodylus porosus, from Ponape, eastern Caroline Islands, with notes on food habitas of crocodiles from the Palau Archipelago. Copeia 1974, 553.
| CrossRef |

Bandelt, H. J., Forster, P., and Rohl, A. (1999). Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16, 37–48.
| CrossRef | CAS |

Bradshaw, C. J. A., Fukuda, Y., Letnic, M., and Brook, B. W. (2006). Incorporating known sources of uncertainty to determine precautionary harvests of saltwater crocodiles. Ecological Applications 16, 1436–1448.
| CrossRef |

Brazaitis, P., Eberdong, J., Brazaitis, P. J., and Watkins-Colwell, G. J. (2009). Notes on the saltwater crocodile, Crocodylus porosus, in the Republic of Palau. Bulletin of the Peabody Museum of Natural History 50, 27–48.
| CrossRef |

Brien, M. L., Read, M. A., McCallum, H. I., and Grigg, G. C. (2008). Home range and movements of radio-tracked estuarine crocodiles (Crocodylus porosus) within a non-tidal waterhole. Wildlife Research 35, 140–149.
| CrossRef |

Burbidge, A. A. (1987). The management of crocodiles in Western Australia. In ‘Wildlife Management: Crocodiles and Alligators’. (Eds G. J. W. Webb, S. C. Manolis and P. J. Whitehead.) pp. 125–127. (Surrey Beatty: Sydney.)

Cicero, C., and Johnson, N. K. (1998). Molecular phylogeography and ecological diversification in a clade of New World songbirds (genus Vireo). Molecular Ecology 7, 1359–1370.
| CrossRef | CAS |

Dawson, M. N., Staton, J. L., and Jacobs, D. K. (2001). Phylogeography of the tidewater goby, Eucyclogobius newberryi (Teleostei, Gobiidae) in coastal California. Evolution 55, 1167–1179.
| CAS |

Excoffier, L., and Lischer, H. E. L. (2010). Arlequin Suite ver 3.5: a new series of programs to perform population genetics analysis under Linux and Windows. Molecular Ecology Resources 10, 564–567.
| CrossRef |

Fitzsimmons, N. N., Buchan, J. C., Lam, P. V., Polet, G, Hung, T. T., Thang, N. Q., and Gratten, J (2002). Identification of purebred Crocodylus siamensis for reintroduction in Vietnam. The Journal of Experimental Zoology 294, 373–381.
| CrossRef | CAS |

Fu, Y. X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147, 915–925.
| CAS |

Glenn, T. C., Staton, J. L., Vu, A. T., Davis, L. M., Bremer, J. R. A., Rhodes, W. E., Brisbin, I. L., and Sawyer, R. H. (2002). Low mictochondrial DNA variation among American alligators and a novel non-coding region in Crocodilians. The Journal of Experimental Zoology 294, 312–324.
| CrossRef | CAS |

Gratten, J. (2003). The molecular systematics, phylogeography and population genetics of Indo-Pacific Crocodylus. Ph.D. Thesis, The University of Queensland, Brisbane.

Isberg, S. R., Chen, Y., Barker, S. G., and Moran, C. (2004). Analysis of microsatellites and parentage testing in saltwater crocodiles. The Journal of Heredity 95, 445–449.
| CrossRef | CAS |

Janke, A., Gullberg, A., Hughes, S., Aggarwal, R. K., and Arnason, U. (2005). Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians. Journal of Molecular Evolution 61, 620–626.
| CrossRef | CAS |

Jenkins, R. W. G. (1987). The world conservation strategy and CITES: principles for the management of crocodilians. In ‘Wildlife Management: Crocodiles and Alligators’. (Eds G. J. W. Webb, S. C. Manolis and P. J. Whitehead.) pp. 27–31. (Surrey Beatty: Sydney.)

Jensen-Seaman, M. I., and Kidd, K. K. (2001). Mitochondrial DNA variation and biogeography of eastern gorillas. Molecular Ecology 10, 2241–2247.
| CrossRef | CAS |

Kay, W. R. (2004). Movements and home ranges of radio-tracked Crocodylus porosus in the Cambridge Gulf region of Western Australia. Wildlife Research 31, 495–508.
| CrossRef |

Leach, G. J., Delaney, J., and Fukuda, Y. (2009). Management program for the saltwater crocodile in the Northern Territory of Australia, 2009–2014. The Northern Territory Department of Natural Resources, Environment, the Arts and Sport, Darwin.

Librado, P., and Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (Oxford, England) 25, 1451–1452.
| CrossRef | CAS |

Lloyd, M., and Morris, P. J. (1999). Phlebotomy techniques in Crocodilians. Bulletin of the Association of Reptilian and Amphibian Veterinarians 9, 12–14.

McNamara, K. J., and Wyre, G. J. (1993). The conservation, management and farming of crocodiles in Western Australia. In ‘Crocodiles: Proceedings of the 2nd Regional Meeting of the Crocodile Specialist Group, 1993, Gland, Switzerland’. (Ed. IUCN.) pp. 435–450.

Messel, H., and Vorlicek, G. C. (1986). Population dynamics and status of Crocodylus porosus in the tidal waterways of norther Australia. Australian Wildlife Research 13, 71–111.
| CrossRef |

Miles, L. G., Isberg, S. R., Glenn, T. C., Lance, S. L., Dalzell, P., Thomson, P. C., and Moran, C. (2009a). A genetic linkage map for the saltwater crocodile (Crocodylus porosus). BMC Genomics 10, 339–349.
| CrossRef |

Miles, L. G., Isberg, S. R., Moran, C., Hagen, C., and Glenn, T. C. (2009b). 253 novel polymorphic microsatellites for the saltwater crocodile (Crocodylus porosus). Conservation Genetics 10, 963–980.
| CrossRef | CAS |

Miles, L. G., Isberg, S. R., Thomson, P. C., Glenn, T. C., Lance, S. L., Dalzell, P., and Moran, C. (2010). QTL mapping for two commercial traits in farmed saltwater crocodiles (Crocodylus porosus). Animal Genetics 41, 142–149.
| CrossRef | CAS |

Miller, J. D. (1993). Crocodiles in Queensland: a brief review. In ‘Crocodiles: Proceedings of the 2nd Regional Meeting of the Crocodile Specialist Group, 1993, Gland, Switzerland’. (Ed. IUCN.) pp. 272–289.

Queensland Parks and Wildlife Service and The University of Queensland. (2003). Determining the movement patterns of adult estaurine crocodiles using satellite telemetry. Envionrmental Protection Agency Report.

Ramos-Onsins, S. E., and Rozas, J. (2002). Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution 19, 2092–2100.
| CrossRef | CAS |

Ray, D. A., and Densmore, L. (2002). The crocodillian mitochondrial control region: general structure, conserved sequence and evolutonary implications. The Journal of Experimental Zoology 294, 334–345.
| CrossRef | CAS |

Ray, D. A., Dever, J. A., Platt, S. G., Rainwater, T. R., Finger, A. G., McMurry, S. T., Batzer, M. A., Barr, B., Stafford, B. J., McKnight, J., and Densmore, L. D. (2004). Low levels of nucleotide diversity in Crocodylus moreletii and evidence of hybridization with C. acutus. Conservation Genetics 5, 449–462.
| CrossRef | CAS |

Raymond, M., and Rousset, F. (1995). An exact test of population differentiation. Evolution 49, 1280–1283.
| CrossRef |

Read, M. A., Miller, J. D., Bell, I. P., and Felton, A. (2004). The distribution and abundance of the estuarine crocodile, Crocodylus porosus, in Queensland. Wildlife Research 31, 527–534.
| CrossRef |

Ross, J. P. (1998). ‘Crocodiles: Status Survey and Conservation Action Plan.’ (IUCN: Switzerland.)

Russello, M., Brazaitis, P., Gratten, J., Watkins-Colwell, G., and Caccone, A. (2007). Molecular assessment of the genetic integrity, distinctiveness, and phylogeographic context of saltwater crocodiles (Crocodylus porosus) on Palau. Conservation Genetics 8, 777–787.
| CrossRef | CAS |

Schmitz, A., Mansfeld, P., Hekkala, E., Shine, T., Nickel, H., Amato, G., and Bohme, W. (2003). Molecular evidence for species level divergence in African Nile crocodiles Crocodylus nioticus (Laurenti 1786). Compus Rendus Palevolution 2, 703–712.
| CrossRef |

St John, J. A., Braun, E. L., Isberg, S. R., Miles, L. G., Chong, A. Y., Gongora, J., Dalzell, P., Moran, C., Bedhom, B., Abzhanov, A., Burgess, S. C., Cooksey, A. M., Castoe, T. A., Crawford, N. G., Densmore, L. D., Drew, J. C., Edwards, S. V., Faircloth, B. C., Fujita, M. K., Greenwold, M. J., Hoffman, F. G., Howard, J. M., Iguchi, T., Janes, D. E., Khan, S. Y., Kohno, S., de Koning, A. J., Lance, S. L., McCarthy, F. M., McCormack, J. E., Merchant, M. E., Peterson, D. G., Pollock, D. D., Pourman, N., Raney, B. J., Roessler, K. A., Sanford, J. R., Sawyer, R. H., Schmidt, C. J., Triplett, E. W., Tuberville, T. D., Venegas-Anaya, M., Howard, J. T., Jarvis, E. D., Guillette, L. J., Glenn, T. C., Green, R. E., and Ray, D. A. (2012). Sequencing three crocodillian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology 13, 415.

Stirrat, S. C., Lawson, D., Freeland, W. J., and Morton, R. (2001). Monitoring Crocodylus porosus populations in the Northern Territory of Austalia: a retrospective power analysis. Wildlife Research 28, 547–554.
| CrossRef |

Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007). MEGA Molecular Evolutionary Genetics Analysis version 4. Molecular Biology and Evolution 24, 1596–1599.
| CrossRef | CAS |

Taplin, L. E. (1987). The management of crocodiles in Queensland, Australia. In ‘Wildlife Management: Crocodiles and Alligators’. (Eds G. J. W. Webb, S. C. Manolis and P. J. Whitehead.) pp. 129–140. (Surrey Beatty: Sydney.)

Taplin, L. E., and Grigg, G. C. (1989). Historical zoogeography of the Eucuchian Crocodilians: a physiological perspective. American Zoologist 29, 885–901.

Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673–4680.
| CrossRef | CAS |

Venegas-Anaya, M., Crawford, A. J., Escobedo-Galvan, A. H., Sanjur, O. I., Densmore, L. D., and Bermingham, E. (2008). Mitochondrial DNA phylogeography of Caiman crocodilus in Mesoamerica and South America. The Journal of Experimental Zoology 309A, 614–627.
| CrossRef | CAS |

Vila, C., Amorim, I. R., Leonard, J. A., Posada, D., Castroviejo, J., Petrucci–Fonseca, F., Crandall, K. A., Ellegren, H., and Wayne, R. K. (1999). Mitochondrial DNA phylogeography and population history of the grey wolf Canis lupus. Molecular Ecology 8, 2089–2103.
| CrossRef | CAS |

Weaver, J. P., Rodriguez, D., Venegas-Anaya, M., Cedeno-Vazquez, J. R., Forstner, M. R., and Densmore, L. D. (2008). Genetic characterization of captive Cuban crocodiles (Crocodylus rhombifer) and evidence of hybridization with the American crocodile (Crocodylus acutus). The Journal of Experimental Zoology 309A, 649–660.
| CrossRef | CAS |

Webb, G. J. W. (1988). Crocodilian research in the Northern Territory 1984–86. In ‘Proceedings of the 8th Working Meeting of the Crocodile Specialist Group of the IUCN, 1988, Gland, Switzerland’. (Ed. IUCN.) pp. 16–21.

Webb, G. J. W., and Manolis, S. C. (1989). ‘Crocodiles of Australia.’ (Reed Books Pty. Ltd.: Sydney.)

Webb, G. J. W., Manolis, S. C., Whitehead, P. J., and Letts, G. A. (1984). A proposal for the transfer of the Australian population of Crocodylus porosus Schneider (1801), from Appendix I to Appendix II of CITES. Conservation Commission of the Northern Territory Technical Report No. 21.

Webb, G. J. W., Whitehead, P. J., and Manolis, S. C. (1987). Crocodile management in the Northern Territory of Australia. In ‘Wildlife Management: Crocodiles and Aligators’. (Eds G. J. W. Webb, S. C. Manolis and P. J. Whitehead.) pp. 107–124. (Surrey Beatty: Sydney.)

Webb, G. J. W., Dillion, M. L., McLean, G. E., Manolis, S. C., and Ottley, B. (1988). Monitoring the recovery of the saltwater crocodile (Crocodylus porosus) population in the Northern Territory of Australia. In ‘Proceedings of the 9th Working Meeting of the Crocodile Specialist Group of the IUCN, 1988, Lae, Papua New Guinea’. (Ed. IUCN.) pp. 329–380.

Webb, G. J. W., Manolis, S. C., and Ottley, B. (1994). Crocodile management and research in the Northern Territory: 1992–94. In ‘Proceedings of the 12th Working Meeting of the Crocodile Specialist Group of the IUCN, 1994, Pattaya, Thailand’. (Ed. IUCN.) pp. 167–180.

Webb, G. J. W., Manolis, S. C., and Brien, M. L. (2010). Saltwater crocodile, Crocodylus porosus. In ‘Crocodiles: Status Survey and Conservation Action Plan’. 3rd edn. (Eds S. C. Manolis and C. Stevenson.) pp. 99–113. (Crocodile Specialist Group: Darwin.)