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Converting genomic discoveries into genetic solutions for dairy pastures – an overview

K. F. Smith A C D , J. W. Forster B C and G. C. Spangenberg B C
+ Author Affiliations
- Author Affiliations

A Primary Industries Research Victoria, Hamilton Centre, Private Bag 105, Hamilton, Vic. 3300, Australia.

B Primary Industries Research Victoria, Victorian Agribiosciences Centre, La Trobe University, Bundoora, Vic. 3086, Australia.

C Molecular Plant Breeding Cooperative Research Centre, Australia.

D Corresponding author. Email: kevin.f.smith@dpi.vic.gov.au

Australian Journal of Experimental Agriculture 47(9) 1032-1038 https://doi.org/10.1071/EA06065
Submitted: 23 June 2006  Accepted: 20 March 2007   Published: 6 August 2007

Abstract

A range of molecular breeding technologies have been developed for forage plant species including both transgenic and non-transgenic methodologies. The application of these technologies has the potential to greatly increase the range of genetic variation that is available for incorporation into breeding programs and its subsequent delivery to producers in the form of improved germplasm. Further developments in plant functional genomics and in detailing the phenotypic effect of genes and alleles both through research in target species and through inference from results from model species will further refine the delivery of new forage cultivars.

Additional keywords: clovers, grasses, molecular markers, plant breeding.


Acknowledgements

Parts of the original research described here were supported by the Department of Primary Industries, Victoria, Australia, CSIRO Plant Industry, Dairy Australia, Heritage Seeds Pty Ltd, Meat and Livestock Australia, the Geoffrey Gardiner Dairy Foundation and the Molecular Plant Breeding CRC.


References


Armstead IP, Turner LB, King IP, Cairns AJ, Humphreys MO (2002) Comparison and integration of genetic maps generated from F2 and BC1 –type mapping populations in perennial ryegrass. Plant Breeding 121, 501–507.
Crossref | GoogleScholarGoogle Scholar | open url image1

Armstead IP, Turner LB, Farrell M, Skøt L, Gomez P, Montoya T, Donnison IS, King IP, Humphreys MO (2004) Synteny between a major heading date QTL in perennial ryegrass (Lolium perenne L.) and the Hd3 heading date locus in rice. Theoretical and Applied Genetics 108, 822–828.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Barnett OW, Gibson PB (1975) Identification and prevalence of white clover viruses and the resistance of Trifolium species to these viruses. Crop Science 15, 32–37. open url image1

Barrett BA, Griffiths M, Schreiber N, Ellison N, Mercer C , et al. (2004) A microsatellite map of white clover. Theoretical and Applied Genetics 109, 596–608.
PubMed |
open url image1

Bernard Vailhé MA, Besle JM, Maillot MP, Cornu A, Halpin C, Knight M (1998) Effect of down-regulation of cinnamyl alcohol dehydrogenase on cell wall composition and on degradability of tobacco stems. Journal of the Science of Food and Agriculture 76, 505–514.
Crossref | GoogleScholarGoogle Scholar | open url image1

Campbell CL, Moyer JA (1984) Yield responses of 6 white clover clones to virus infection under field conditions. Plant Disease 68, 1033–1035. open url image1

Casler MD (2001) Breeding forage crops for increased nutritive value. Advances in Agronomy 71, 51–107. open url image1

Chen L, Auh CK, Dowling P, Bell J, Lehmann D, Wang ZY (2004) Transgenic down-regulation of caffeic acid O-methyltransferase (COMT) led to improved digestibility in tall fescue (Festuca arundinacea). Functional Plant Biology 31, 235–245.
Crossref | GoogleScholarGoogle Scholar | open url image1

Cogan NOI, Smith KF, Yamada T, Francki MG, Vecchies AC, Jones ES, Spangenberg GC, Forster JW (2005) QTL analysis and comparative genomics of herbage quality traits in perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics 110, 364–380.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Crill P, Hanson EW, Hagedorn J (1971) Resistance and tolerance to alfalfa mosaic virus in alfalfa. Phytopathology 61, 371–379. open url image1

Ding YL, Aldao-Humble G, Ludlow E, Drayton M, Lin YH , et al. (2003) Efficient plant regeneration and Agrobacterium-mediated transformation in Medicago and Trifolium species. Plant Science 165, 1419–1427.
Crossref | GoogleScholarGoogle Scholar | open url image1

Dudas B, Woodfield DR, Tong PM, Nicholls MF, Cousins GR, Burgess R, White DWR, Beck DL, Lough TJ, Forster RLS (1998) Estimating the agronomic impact of white clover mosaic virus on white clover performance in the North Island of New Zealand. New Zealand Journal of Agricultural Research 41, 171–178. open url image1

Dumsday JL, Smith KF, Forster JW, Jones ES (2003) SSR-based genetic linkage analysis of resistance to crown rust (Puccinia coronata f. sp. Lolii) in perennial ryegrass (Lolium perenne). Plant Pathology 52, 628–637.
Crossref | GoogleScholarGoogle Scholar | open url image1

Elkind Y, Edwards R, Mavandad M, Hedrick SA, Riback O, Dixon RA, Lamb CJ (1990) Abnormal plant development and down-regulation of phenylpropanoid biosynthesis in transgenic tobacco containing a heterologous phenylalanine ammonia-lyase gene. Proceedings of the National Academy of Sciences of the United States of America 87, 9057–9061.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Emmerling M, Smith KF, Chu P, Kalla R, Spangenberg G (2004) Field evaluation of transgenic white clover with AMV immunity and development of elite transgenic germplasm. ‘Molecular breeding of forage and turf’. (Eds A Hopkins, Z-Y Wang, R Mian, M Sledge, RE Barker) pp. 359–366. (Kluwer Academic Publishers: Dordrecht, The Netherlands)

Faville MJ, Vecchies AC, Schrieber M, Drayton MC, Hughes LJ , et al. (2004) Functionally associated molecular genetic marker map construction in perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics 110, 12–32.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Garrett RG (1991) Impact of viruses on pasture legume productivity. In ‘Proceedings of the Department of Agriculture, Victoria, white clover conference’. pp. 50–57. (Department of Agriculture: Victoria)

Gibson PB, Barnett OW, Skipper HD, McLaughlin MR (1981) Effects of 3 viruses on growth of white clover. Plant Disease 65, 50–51. open url image1

Gibson PB, Barnett OW, Pedersen MR, McLaughlin MR, Knight WE, Miller JD, Cope WA, Tolin WA (1989) Registration of southern regional virus resistant white clover germplasm. Crop Science 29, 241–242. open url image1

Goff SA, Ricke D, Lan TH, Presting G, Wang R , et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296, 92–100.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Hayward MD, Forster JW, Jones JG, Dolstra O, Evans C , et al. (1998) Genetic analysis of Lolium. I. Identification of linkage groups and the establishment of a genetic map. Plant Breeding 117, 451–455.
Crossref | GoogleScholarGoogle Scholar | open url image1

Heath R, Huxley H, Stone B, Spangenberg G (1998) cDNA cloning and differential expression of three caffeic acid O-methyltransferase homologues from perennial ryegrass (Lolium perenne L.). Journal of Plant Physiology 153, 649–657. open url image1

Jensen LB, Andersen JR, Frei U, Xing Y, Taylor C, Holm PB, Lübberstedt T (2005) QTL mapping of vernalization response in perennial ryegrass (Lolium perenne L.) reveals comparative relationships with other Poaceae species. Theoretical and Applied Genetics 110, 527–536.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Jones ES, Mahoney NL, Hayward MD, Armstead IP, Jones JG , et al. (2002a) An enhanced molecular marker-based map of perennial ryegrass (Lolium perenne L.) reveals comparative relationships with other Poaceae species. Genome 45, 282–295.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Jones ES, Dupal MD, Dumsday JL, Hughes LJ, Forster JW (2002b) An SSR-based genetic linkage map for perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics 105, 577–584.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Jones E, Hughes L, Drayton M, Abberton M, Michaelson-Yeates T, Bowen C, Forster J (2003) An SSR and AFLP molecular marker-based genetic map of white clover (Trifolium repens L.). Plant Science 165, 531–539.
Crossref | GoogleScholarGoogle Scholar | open url image1

Kalla R, Chu P, Spangenberg G (2000) Molecular breeding of forage legumes for virus resistance. In ‘Molecular breeding of forage crops’. (Ed. G Spangenberg) pp. 219–237. (Kluwer Academic Publishers: Dordrecht, The Netherlands)

Kulikova O, Geurts R, Lamine M, Kim DJ, Cook DR, Leunissen J, de Jong H, Roe BA, Bisseling T (2004) Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula. Chromosoma 113, 276–283.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Latch GCM, Skipp RA (1987) Diseases. In ‘White clover’. (Eds MJ Baker, WM Williams) pp. 421–446. (CAB International: Wallingford, UK)

Lynch D, Lidgett A, McInnes R, Huxley H, Jones E, Mahoney N, Spangenberg G (2002) Isolation and characterisation of three cinnamyl alcohol dehydrogenase homologue cDNAs from perennial ryegrass (Lolium perenne L.). Journal of Plant Physiology 159, 653–660.
Crossref | GoogleScholarGoogle Scholar | open url image1

Martin PH, Coulman BE, Peterson JF (1997) Genetics to resistance to alfalfa mosaic virus in red clover. Canadian Journal of Plant Science 77, 601–605. open url image1

May GD (2005) Translational genomics for alfalfa varietal improvement. In ‘Molecular breeding for the genetic improvement of forage and turf’. (Ed. MO Humphreys) pp. 55–62. (Wageningen Academic Publishers: Wageningen, The Netherlands)

McInnes R, Lidgett A, Lynch D, Huxley H, Jones E, Mahoney N, Spangenberg G (2002) Isolation and characterisation of a cinnamoyl-CoA reductase gene from perennial ryegrass (Lolium perenne L.). Journal of Plant Physiology 159, 415–422.
Crossref | GoogleScholarGoogle Scholar | open url image1

McLaughlin MR, Fairbrother TE (1993) Selecting subclover for resistance to clover yellow vein virus. Phytopathology 83, 1421. open url image1

Nikandrow A, Chu PWG (1991) Pests and diseases. The NSW experience. In ‘Proceedings of the white clover conference’. pp. 64–67. (Department of Agriculture: Victoria)

Sawbridge T, Ong EK, Binnion C, Emmerling M, McInnes R , et al. (2003a) Generation and analysis of expressed sequence tags in perennial ryegrass (Lolium perenne L.). Plant Science 165, 1089–1100.
Crossref | GoogleScholarGoogle Scholar | open url image1

Sawbridge T, Ong EK, Binnion C, Emmerling M, Meath K , et al. (2003b) Generation and analysis of expressed sequence tags in white clover (Trifolium repens L.). Plant Science 165, 1077–1087.
Crossref | GoogleScholarGoogle Scholar | open url image1

Sewalt VJH, Ni W, Jung HG, Dixon RA (1997) Lignin impact on fiber degradation: Increased enzymatic digestibility of genetically engineered tobacco (Nicotiana tabacum) stems reduced in lignin content. Journal of Agricultural and Food Chemistry 45, 1977–1983.
Crossref | GoogleScholarGoogle Scholar | open url image1

Shinozuka H, Hisano H, Yoneyama S, Shimamoto Y, Jones ES, Forster JW, Yamada T, Kanazawa A (2006) Cold-responsive gene expression, linkage mapping and protein localization in the nucleus of glycine-rich RNA-binding protein gene from perennial ryegrass suggest a role for cold adaptation. Molecular Genetics and Genomics 275, 399–408.
Crossref | PubMed |
open url image1

Spangenberg G, Wang ZY, Potrykus I (1998) Biotechnology in forage and turf grass improvement. In ‘Monographs on theoretical and applied genetics. Vol. 23’. (Eds R Frankel, M Grossman, HF Linskens, P Maliga, R Riley) pp. 127–146. (Springer Verlag: Heidelberg)

Spangenberg G, Kalla R, Lidgett A, Sawbridge T, Ong EK, John U (2001) Breeding forage plants in the genome era. In ‘Molecular breeding of forage and turf’. (Ed. G Spangenberg) pp. 1–39. (Kluwer Academic Publishers: Dordrecht, Netherlands)

Spangenberg G, Forster JW, Edwards D, John U, Mouradov A, et al. (2005) Future directions in molecular breeding of forage and turf. In ‘Molecular breeding for the genetic improvement of forage and turf’. (Ed. MO Humphreys) pp. 83–98. (Wageningen Academic Publishers: Wageningen, The Netherlands)

Stougaard J (2001) Genetics and genomics of root symbiosis. Current Opinion in Plant Biology 4, 328–335.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

van Zijll de Jong E, Guthridge KM, Spangenberg GC, Forster JW (2003) Development and characterization of EST-derived simple sequence repeat (SSR) markers for pasture grass endophytes. Genome 46, 277–290.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

van Zijll de Jong E, Bannan NR, Batley J, Guthridge KM, Spangenberg GC, Smith KF, Forster JW (2004) Genetic diversity in the perennial ryegrass fungal endophyte Neotyphodium lolii. In ‘Molecular breeding of forage and turf’. (Eds A Hopkins, Z-Y Wang, R Mian, M Sledge, RE Barker) pp. 155–164. (Kluwer Academic Publishers: Dordrecht, The Netherlands)

van Zijll de Jong E, Smith KF, Spangenberg GC, Forster JW (2005) Molecular genetic marker-based analysis of the forage grass host–Neotyphodium endophyte interaction. In ‘Neotyphodium in cool season grasses: current research and applications’. (Eds C Roberts, C West, D Spiers) pp. 123–133. (Blackwell Publishing: Ames, IA)

Yamada T, Forster JW (2005) QTL analysis and trait dissection in ryegrasses (Lolium spp.). In ‘Molecular Breeding for the Genetic Improvement of Forage Crops and Turf’. (Ed. MO Humphreys) pp. 43–53. (Wageningen Academic Publishers: Wageningen)

Yamada T, Jones ES, Cogan NOI, Vecchies AC, Nomura T, Hisano H, Shimamoto Y, Smith KF, Hayward MD, Forster JW (2004) QTL analysis of morphological, developmental, and winter hardiness-associated traits in perennial ryegrass. Crop Science 44, 925–935. open url image1

Ye XD, Wu XL, Zhao H, Frehner M, Nösberger J, Potrykus I, Spangenberg G (2001) Altered fructan accumulation in transgenic Lolium multiflorum plants expressing a Bacillus subtilis sacB gene. Plant Cell Reports 20, 205–212.
Crossref | GoogleScholarGoogle Scholar | open url image1

Yu J, Hu S, Wang J, Wong GKS, Li S , et al . (2002) A draft sequence of the rice genome sequence (Oryza sativa L. ssp. indica). Science 296, 79–91.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1