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Advances in the aquatic sciences
RESEARCH ARTICLE

Conservation implications of distinct genetic structuring in the endangered freshwater fish Nannoperca oxleyana (Percichthyidae)

James T. Knight A B D , Catherine J. Nock C , Martin S. Elphinstone C and Peter R. Baverstock C
+ Author Affiliations
- Author Affiliations

A NSW Department of Primary Industries, Locked Bag 1, Nelson Bay, NSW 2315, Australia.

B School of Environmental Science and Management, Southern Cross University, Lismore, NSW 2480, Australia.

C Centre for Animal Conservation Genetics, Southern Cross University, PO Box 157, Lismore, NSW 2480, Australia.

D Corresponding author. Email: james.knight@dpi.nsw.gov.au

Marine and Freshwater Research 60(1) 34-44 https://doi.org/10.1071/MF08022
Submitted: 30 January 2008  Accepted: 22 October 2008   Published: 29 January 2009

Abstract

The maintenance of genetic diversity and gene flow in threatened species is a vital consideration for recovery programs. The endangered Oxleyan pygmy perch Nannoperca oxleyana has a fragmented distribution within coastal freshwater drainages of southern Queensland and northern New South Wales, Australia. In the present study, mitochondrial DNA control region variation was used to assess genetic diversity and structure across the geographical range of this species. Haplotypic diversity was highest in a small NSW subcatchment south of Evans Head (h = 0.594) followed by Marcus Creek in Queensland (h = 0.475). Distinct genetic differentiation was evident among the Queensland localities and the NSW subcatchments, implying restricted gene flow between coastal river systems. One of the nine haplotypes detected was distributed over 83.4% of the species’ range, suggesting historical connectivity among the now fragmented populations. These patterns were concordant with eustatic changes associated with the last glacial maximum. High barrier sand dunes may also act as barriers to gene flow and dispersal between adjacent NSW subcatchments. Conservation efforts should focus on the preservation of genetic diversity by maintaining as many genetically differentiated populations as possible. The relatively diverse populations inhabiting the South Evans Head subcatchment and Marcus Creek require special management consideration.

Additional keywords: floodplain connectivity, fragmentation, genetic diversity, mitochondrial DNA, population structure, wallum.


Acknowledgements

This paper is from PhD research by J. Knight, supported by the Australian Research Council, NSW Department of Primary Industries (DPI) and Southern Cross University, Lismore. We thank J. Hughes for providing the Queensland haplotype sequence data and the numerous NSW DPI staff that assisted with sample collection. We also thank A. Arthington, D. Gilligan, J. Hughes, D. Jerry and an anonymous referee for comments on drafts of the manuscript. Sample collection was approved by the animal care and ethics committees of NSW DPI (ACEC Ref. 02/09) and Southern Cross University (Authority No. 03/14).


References

Allendorf F. W., and Luikart G. (2007). ‘Conservation and the Genetics of Populations.’ (Blackwell Publishing: Malden.)

Arthington A. H. (1996). Recovery plan for the Oxleyan pygmy perch, Nannoperca oxleyana. Centre for Catchment and In-stream Research, Griffith University, Nathan, Queensland.

Balcombe, S. R. , Bunn, S. E. , McKenzie-Smith, F. J. , and Davies, P. M. (2005). Variability of fish diets between dry and flood periods in an arid zone floodplain river. Journal of Fish Biology 67, 1552–1567.
Crossref | GoogleScholarGoogle Scholar | Cowx I. G. (2002). Analysis of threats to freshwater fish conservation: past and present challenges. In ‘Conservation of Freshwater Fishes: Options for the Future’. (Eds M. J. Collares-Pereira, I. G. Cowx and M. M. Coelho.) pp. 201–220. (Oxford Fishing News Books, Blackwell Science: Oxford.)

Donaldson, K. A. , and Wilson, R. R. (1999). Amphi-panamic geminates of snook (Percoidei : Centropomidae) provide a calibration of the divergence rate in the mitochondrial DNA control region of fishes. Molecular Phylogenetics and Evolution 13, 208–213.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | Frankham R., Ballou J. D., and Briscoe D. A. (2002). ‘Introduction to Conservation Genetics.’ (Cambridge University Press: Cambridge.)

Griffith, S. J. , Bale, C. , Adam, P. , and Wilson, R. (2003). Wallum and related vegetation on the NSW North Coast: description and phytosociological analysis. Cunninghamia 8, 202–252.
Groom M. J. (2006). Threats to biodiversity. In ‘Principles of Conservation Biology’. 3rd edn. (Eds M. J. Groom, G. K. Meffe and C. R. Carroll.) pp. 63–109. (Sinauer Associates: Sunderland.)

Hedrick, P. (2005). ‘Genetic restoration’: a more comprehensive perspective than ‘genetic rescue’. Trends in Ecology & Evolution 20, 109.
Crossref | GoogleScholarGoogle Scholar | IUCN (2004). ‘2004 IUCN Red List of Threatened Species.’ Available at http://www.iucnredlist.org [verified 17 January 2006].

Jerry, D. R. , and Baverstock, P. R. (1998). Consequences of a catadromous life-strategy for levels of mitochondrial DNA differentiation among populations of the Australian bass, Macquaria novemaculeata. Molecular Ecology 7, 1003–1013.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | Junk W. J., Bayley P. B., and Sparks R. E. (1989). The flood pulse concept in river-floodplain systems. In ‘Proceedings of the International Large River Symposium’. (Ed. D. P. Dodge.) pp. 110–127. (Canadian Special Publication of Fisheries and Aquatic Sciences 106: Ottawa.)

Knight J. T. (2000). Distribution, population structure and habitat preferences of the Oxleyan pygmy perch Nannoperca oxleyana Whitley 1940 near Evans Head, north-eastern New South Wales. BApplSc (Hons) Thesis, Southern Cross University, Lismore, New South Wales.

Knight J. T. (2008). Aspects of the biology and conservation of the endangered Oxleyan pygmy perch Nannoperca oxleyana Whitley. PhD Thesis, Southern Cross University, Lismore, New South Wales.

Knight J. T. Distribution and conservation status of the endangered Oxleyan pygmy perch, Nannoperca oxleyana Whitley, in New South Wales. NSW Department of Primary Industries Fisheries Final Report Series, Cronulla, New South Wales, in press.

Knight, J. T. , and Arthington, A. H. (2008). Distribution and habitat associations of the endangered Oxleyan pygmy perch, Nannoperca oxleyana Whitley, in eastern Australia. Aquatic Conservation: Marine & Freshwater Ecosystems 18, 1240–1254.
Crossref | GoogleScholarGoogle Scholar | NSW DLWC (1999). Stressed rivers assessment: stressed rivers report for unregulated rivers in NSW. NSW Department of Land and Water Conservation, Sydney.

NSW DPI (2005). Oxleyan pygmy perch: recovery plan and background paper. NSW Department of Primary Industries Fisheries Management Branch, Port Stephens Fisheries Centre, Taylors Beach.

NSW NPWS (1997). Broadwater National Park, Bundjalung National Park and Iluka Nature Reserve Plan of Management. NSW National Parks and Wildlife Service, Hurstville, Sydney.

Page, T. J. , and Hughes, J. M. (2007). Phylogeographic structure in an Australian freshwater shrimp largely pre-dates the geological origins of its landscape. Heredity 98, 222–231.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | Pusey B. J., Kennard M., and Arthington A. H. (2004). ‘Freshwater Fishes of North-eastern Australia.’ (CSIRO Publishing: Melbourne.)

Rahel, F. J. (2007). Biogeographic barriers, connectivity and homogenization of freshwater faunas: it’s a small world after all. Freshwater Biology 52, 696–710.
Crossref | GoogleScholarGoogle Scholar | Timms B. V. (1986). The coastal dune lakes of eastern Australia. In ‘Limnology in Australia’. (Eds P. De Deckker and W. D. Williams.) pp. 421–432. (CSIRO: Melbourne.)

Ward, R. , Woodwark, M. , and Skibinski, D. O. F. (1994). A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. Journal of Fish Biology 44, 213–232.
Crossref | GoogleScholarGoogle Scholar | Welcomme R. L. (1985). River fisheries. FAO Fisheries Technical Paper No. 262, FAO, Rome.

Wright P. (1991). The NPA guide to the national parks of northern New South Wales. The National Parks Association of NSW, Sydney.