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Advances in the aquatic sciences
RESEARCH ARTICLE

Biogeography and life history ameliorate the potentially negative genetic effects of stocking on Murray cod (Maccullochella peelii peelii)

Meaghan L. Rourke A B D F , Helen C. McPartlan B E , Brett A. Ingram C and Andrea C. Taylor A
+ Author Affiliations
- Author Affiliations

A Australian Centre for Biodiversity, School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia.

B Primary Industries Research Victoria, Department of Primary Industries, Attwood, Vic. 3049, Australia.

C Marine and Freshwater Fisheries Research Institute, Fisheries Victoria, Department of Primary Industries, Alexandra, Vic. 3714, Australia.

D Present address: Narrandera Fisheries Centre, Industry and Investment NSW, Narrandera, NSW 2700, Australia.

E Present address: Primary Care Research Unit, Department of General Practice, University of Melbourne, Carlton, Vic. 3053, Australia.

F Corresponding author. Email: meaghan.rourke@industry.nsw.gov.au

Marine and Freshwater Research 61(8) 918-927 https://doi.org/10.1071/MF10037
Submitted: 15 February 2010  Accepted: 20 May 2010   Published: 13 August 2010

Abstract

Stocking wild fish populations with hatchery-bred fish has numerous genetic implications for fish species worldwide. In the present study, 16 microsatellite loci were used to determine the genetic effects of nearly three decades of Murray cod (Maccullochella peelii peelii) stocking in five river catchments in southern Australia. Genetic parameters taken from scale samples collected from 1949 to 1954 before the commencement of stocking were compared with samples collected 16 to 28 years after stocking commenced, and with samples from a local hatchery that supplements these catchments. Given that the five catchments are highly connected and adult Murray cod undertake moderate migrations, we predicted that there would be minimal population structuring of historical samples, whereas contemporary samples may have diverged slightly and lost genetic diversity as a result of stocking. A Bayesian Structure analysis indicated genetic homogeneity among the catchments both pre- and post-stocking, indicating that stocking has not measurably impacted genetic structure, although allele frequencies in one catchment changed slightly over this period. Current genetic diversity was moderately high (HE = 0.693) and had not changed over the period of stocking. Broodfish had a similar level of genetic diversity to the wild populations, and effective population size had not changed substantially between the two time periods. Our results may bode well for stocking programs of species that are undertaken without knowledge of natural genetic structure, when river connectivity is high, fish are moderately migratory and broodfish are sourced locally.

Additional keywords: effective population size, genetic diversity, historical scale samples, microsatellite, Murray–Darling Basin.


Acknowledgements

This work was supported by an Australian Postgraduate Award through Monash University, the Victorian Government’s Our Rural Landscapes Initiative, the Recreational Fishing Trust and the Holsthworth Wildlife Research Fund. We thank Queensland DPI, NSW Industry and Investment and Fisheries Victoria for providing Murray cod stocking records. We also thank J. Douglas, R. Strongman, J. Lieschke, A. King, D. Crook, A. Bearlin, K. Pomorin, D. Gilligan, B. Zampatti, D. Bray, D. Tikel, N. Murray, B. Malcolm, J. Pritchard and countless recreational anglers for assisting with sample collection. We are grateful to S. Rowland and J. Douglas for sharing their extensive knowledge of Murray cod, and to two anonymous reviewers for suggesting improvements to the manuscript. The research was conducted under animal ethics approvals from the Department of Primary Industries (AEC Fish Nov 05 0001) and Monash University (BSCI/2005/02).


References

Anderson, J. R. , Morison, A. K. , and Ray, D. J. (1992). Age and growth of Murray cod, Maccullochella peelii (Perciformes : Percichthyidae), in the lower Murray-Darling Basin, Australia, from thin sectioned otoliths. Australian Journal of Marine and Freshwater Research 43, 983–1013.
Crossref | GoogleScholarGoogle Scholar | Bearlin A. R., and Tikel D. (2002). Conservation genetics of Murray-Darling Basin fish; silver perch (Bidyanus bidyanus), Murray cod (Maccullochella peelii), and trout cod (M. macquariensis). In ‘Managing Fish Translocation and Stocking in the Murray-Darling Basin. Statement, Recommendations and Supporting Papers, Canberra, 25–26 September 2002’. (Ed. B. Phillips.) pp. 59–83. (Union Offset Printers: Canberra.)

Berthier, P. , Beaumont, M. A. , Cornuet, J. , and Luikart, G. (2002). Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a general approach. Genetics 160, 741–751.
PubMed | Crow J. F., and Kimura M. (1970). ‘An Introduction to Population Genetics Theory.’ (Harper and Row: New York.)

DeWoody, J. , Nason, J. D. , and Hipkins, V. D. (2006). Mitigating scoring errors in microsatellite data from wild populations. Molecular Ecology Notes 6, 951–957.
Crossref | GoogleScholarGoogle Scholar | Frankham R., Ballou J. D., and Briscoe D. A. (2002). ‘Introduction to Conservation Genetics.’ (Cambridge University Press: Cambridge, UK.)

Franklin I. R. (1980). Evolutionary change in small populations. In ‘Conservation Biology: An Evolutionary–Ecological Perspective’. (Eds M. E. Soule and B. A. Wilcox.) pp. 135–149. (Sinauer: Sunderland, MA.)

Franklin, I. R. , and Frankham, R. (1998). How large must populations be to retain evolutionary potential? Animal Conservation 1, 69–70.
Crossref | GoogleScholarGoogle Scholar | Lake J. S. (1971). ‘Freshwater Fishes and Rivers of Australia.’ (Thomas Nelson: Sydney.)

Largiadèr, C. R. , and Scholl, A. (1995). Effects of stocking on the genetic diversity of brown trout populations of the Adriatic and Danubian drainages in Switzerland. Journal of Fish Biology 47(Suppl. A), 209–225.
Crossref | GoogleScholarGoogle Scholar | Maudet C., Miller C., Bassano B., Breitenmoser-Wursten C., Gauthier D., et al. (2002). Microsatellite DNA and recent statistical methods in wildlife conservation management: applications in Alpine ibex [Capra ibex (ibex)]. Molecular Ecology 11, 421–436doi:10.1046/J.0962-1083.2001.01451.X

Miller L. M., and Kapuscinski A. R. (2003). Genetic guidelines for hatchery supplementation programs. In ‘Population Genetics Principles and Applications for Fisheries Scientists’. (Ed. E. M. Hallerman.) pp. 329–355. (American Fisheries Society: Bethesda.)

Nei M. (1987). ‘Molecular Evolutionary Genetics.’ (Columbia University Press: New York.)

Nielsen, E. E. , Hansen, M. M. , and Bach, L. A. (2001). Looking for a needle in a haystack: discovery of indigenous Atlantic salmon (Salmo salar L.) in stocked populations. Conservation Genetics 2, 219–232.
Crossref | GoogleScholarGoogle Scholar | Peel D., Ovenden J. R., and Peel S. L. (2004). NeEstimator: software for estimating effective population size (Version 1.3). Department of Primary Industries and Fisheries, Queensland Government, Queensland.

Piry, S. , Luikart, G. , and Cornuet, J.-M. (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. The Journal of Heredity 90, 502–503.
Crossref | GoogleScholarGoogle Scholar | Rowland S. J. (1988). ‘Murray Cod.’ (Agfact, NSW Agriculture and Fisheries: Grafton.)

Rowland, S. J. (1989). Aspects of the history and fishery of the Murray Cod, Maccullochella peeli (Mitchell) (Percichthyidae). Proceedings of the Linnean Society of New South Wales 111, 201–213.
Rowland S. J. (1995). Stocking of freshwater fishes and policy in New South Wales. Translocation issues in Western Australia. Fisheries Management Paper No. 83. Fisheries Department of Western Australia, Perth.

Rowland, S. J. (1998). Aspects of the reproductive biology of Murray cod, Maccullochella peelii peelii. Proceedings of the Linnean Society of New South Wales 120, 147–162.
Rowland S. J. (2005). Overview of the history, fishery, biology and aquaculture of Murray cod (Maccullochella peelii peelii). In ‘Management of Murray Cod in the Murray-Darling Basin. Statement, Recommendations and Supporting Papers, Canberra, 3–4 June 2004’. (Eds M. Lintermans and B. Phillips.) pp. 38–61. (Murray-Darling Basin Commission: Canberra.)

Rowland S. J., and Tully P. (2004). Hatchery quality assurance program for Murray cod (Maccullochella peelii peelii) golden perch (Macquaria ambigua) and silver perch (Bidyanus bidyanus). New South Wales Department of Primary Industries, Sydney.

Ryman, N. , and Laikre, L. (1991). Effects of supportive breeding on the genetically effective population size. Conservation Biology 5, 325–329.
Crossref | GoogleScholarGoogle Scholar |

Ryman, N. , and Palm, S. (2006). POWSIM: a computer program for assessing statistical power when testing for genetic differentiation. Molecular Ecology Notes 6, 600–602.
Crossref | GoogleScholarGoogle Scholar |

Wan, Q. H. , Fang, S. G. , and Li, Y. N. (2003). The loss of genetic diversity in Dabry’s sturgeon (Acipenser dabryanus, Dumeril) as revealed by DNA fingerprinting. Aquatic Conservation: Marine & Freshwater Ecosystems 13, 225–231.
Crossref | GoogleScholarGoogle Scholar |

Wang, J. , and Ryman, N. (2001). Genetic effects of multiple generations of supportive breeding. Conservation Biology 15, 1619–1631.
Crossref | GoogleScholarGoogle Scholar |

Waples, R. S. (1989). A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics 121, 379–391.
PubMed |

Waples, R. S. (2005). Genetic estimates of contemporary effective population size: to what time periods do the estimates apply? Molecular Ecology 14, 3335–3352.
Crossref | GoogleScholarGoogle Scholar | PubMed |

Waples, R. S. (2006). A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked loci. Conservation Genetics 7, 167–184.
Crossref | GoogleScholarGoogle Scholar |

Waples, R. S. , and Do, C. (2008). LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources 8, 753–756.
Crossref | GoogleScholarGoogle Scholar |

Welcomme, R. L. , and Bartley, D. M. (1998). Current approaches to the enhancement of fisheries. Fisheries Management and Ecology 5, 351–382.
Crossref | GoogleScholarGoogle Scholar |

Wirgin, I. , Waldman, J. , Stabile, J. , Lubinski, B. , and King, T. (2002). Comparison of mitochondrial DNA control region sequence and microsatellite DNA analyses in estimating population structure and gene flow rates in Atlantic sturgeon Acipenser oxyrinchus. Journal of Applied Ichthyology 18, 313–319.
Crossref | GoogleScholarGoogle Scholar |

Zhao, N. , Ai, W. , Shao, Z. , Brosse, S. , and Chang, J. (2005). Microsatellites assessment of Chinese sturgeon (Acipenser sinensis Gray) genetic variability. Journal of Applied Ichthyology 21, 7–13.
Crossref | GoogleScholarGoogle Scholar |