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Open Access Article << Previous     |     Next >>   Contents Vol 63(3)

Estimating Relative Disulfide Energies: An Accurate Ab Initio Potential Energy Surface

Naomi L. Haworth A, Jason Y. Liu A, Samuel W. Fan A B, Jill E. Gready C, Merridee A. Wouters A B D

A Structural & Computational Biology Division, Victor Chang Cardiac Research Institute, Sydney, NSW 2010, Australia.
B School of Medical Sciences, University of New South Wales, Sydney, NSW 2052, Australia.
C John Curtin School of Medical Research, Canberra City, ACT 2601, Australia.
D Corresponding author. Email: m.wouters@victorchang.edu.au
 
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Abstract

Disulfide torsional energy, a good predictor of disulfide redox potential in proteins, may be estimated by interpolation on a potential energy surface (PES) describing the twisting of diethyl disulfide through its three central dihedral angles. Here we update PES calculations at the M05-2X level of theory with the 6-31G(d) basis set. Although the surface shows no qualitative differences from an earlier MP2(full) PES, energy differences greater than 1 kJ mol–1 were seen for conformations with χ2 between –60° and 30°, or with χ3 below 60° or above 130°. This is particularly significant for highly strained disulfides that are likely to be spontaneously reduced by mechanical means. In benchmarking against the high-level G3X method, M05-2X showed significantly reduced root mean squared deviation compared with MP2(full) (1.0 versus 2.0 kJ mol–1 respectively). Results are incorporated into a web application that calculates relative torsional energies from disulfide dihedral angles (http://www.sbinf.org/applications/pes.html).



   


    
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