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Article << Previous     |     Next >>   Contents Vol 39(1)

Canopy conundrums: building on the Biosphere 2 experience to scale measurements of inner and outer canopy photoprotection from the leaf to the landscape

Caroline J. Nichol A, Roland Pieruschka B, Kotaro Takayama C, Britta Förster D, Zbigniew Kolber E, Uwe Rascher B, John Grace A, Sharon A. Robinson F, Barry Pogson D and Barry Osmond D F G

A School of GeoSciences, University of Edinburgh, West Mains Road, Edinburgh EH9 3JN, Scotland, UK.
B Institute for Bio- and Geosciences IBG 2: Plant Sciences, Forschungszentrum Jülich, 52425 Jülich, Germany.
C Laboratory of Physiological Green Systems, Department of Biomechanical Systems, Faculty of Agriculture, Ehime University, 3-5-7, Tarumi, Matsuyama 790-8566, Japan.
D Plant Sciences Division, Research School of Biology, Australian National University, Canberra, ACT 0200, Australia.
E Ocean Sciences, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA.
F Institute for Conservation Biology and Ecosystem Management, School of Biological Sciences, University of Wollongong, Wollongong, NSW 2522, Australia.
G Corresponding author. Email: osmond@grapevine.net.au

Functional Plant Biology 39(1) 1-24 http://dx.doi.org/10.1071/FP11255
Submitted: 12 November 2011  Accepted: 2 December 2011   Published: 12 January 2012


 
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Abstract

Recognising that plant leaves are the fundamental productive units of terrestrial vegetation and the complexity of different environments in which they must function, this review considers a few of the ways in which these functions may be measured and potentially scaled to the canopy. Although canopy photosynthetic productivity is clearly the sum of all leaves in the canopy, we focus on the quest for ‘economical insights’ from measurements that might facilitate integration of leaf photosynthetic activities into canopy performance, to better inform modelling based on the ‘insights of economics’. It is focussed on the reversible downregulation of photosynthetic efficiency in response to light environment and stress and summarises various xanthophyll-independent and dependent forms of photoprotection within the inner and outer canopy of woody plants. Two main themes are developed. First, we review experiments showing the retention of leaves that grow old in the shade may involve more than the ‘payback times’ required to recover the costs of their construction and maintenance. In some cases at least, retention of these leaves may reflect selection for distinctive properties that contribute to canopy photosynthesis through utilisation of sun flecks or provide ‘back up’ capacity following damage to the outer canopy. Second, we report experiments offering hope that remote sensing of photosynthetic properties in the outer canopy (using chlorophyll fluorescence and spectral reflectance technologies) may overcome problems of access and provide integrated measurements of these properties in the canopy as a whole. Finding appropriate tools to scale photosynthesis from the leaf to the landscape still presents a challenge but this synthesis identifies some measurements and criteria in the laboratory and the field that improve our understanding of inner and outer canopy processes.

Additional keywords: avocado, chlorophyll fluorescence, LIFT, lutein-epoxide cycle, NPQ, PAM photoacclimation, photoinhibition, PRI, violaxanthin cycle.


References

Adams WW, Demmig-Adams B, Verhoeven AS, Barker DH (1995) ‘Photoinhibition’ during winter stress: involvement of sustained xanthophyll cycle-dependent energy dissipation. Australian Journal of Plant Physiology 22, 261–276.
CrossRef | CAS |

Adams WW, Demmig-Adams B, Logan BA, Barker DH, Osmond CB (1999) Rapid change in xanthophyll cycle-dependent energy dissipation and photosystem II efficiency in two vines: Stephania japonica and Smilax australis, growing in the understory of an open Eucalyptus forest. Plant, Cell & Environment 22, 125–136.
CrossRef | CAS |

Ahrends HE, Etzold S, Kutsch WL, Stöckli R, Brügger R, Jeanneret F, Wanner H, Buchmann N, Eugster W (2009) Tree phenology and carbon dioxide fluxes: use of digital photography for process-based interpretation at the ecosystem scale. Climate Research 39, 261–274.
CrossRef |

Ananyev G, Kolber ZS, Klimov D, Falkowski PG, Berry JA, Rascher U, Martin R, Osmond B (2005) Remote sensing of heterogeneity in photosynthetic efficiency, electron transport and dissipation of excess light in Populus deltoides stands under ambient and elevated CO2 concentrations, and in a tropical forest canopy, using a new laser-induced fluorescence transient (LIFT) device. Global Change Biology 11, 1195–1206.
CrossRef |

Anderson JM, Park YI, Chow WS (1997) Photoinactivation and photoprotection of photosystem II in nature. Physiologia Plantarum 100, 214–223.
CrossRef | CAS |

Apostol S, Briantais J-M, Moise N, Cerovic ZG, Moya I (2001) Photoinactivation of the photosynthetic electron transport chain by accumulation of over-saturating light pulses given to dark adapted pea leaves. Photosynthesis Research 67, 215–227.
CrossRef | CAS |

Asner GP, Nepstad D, Cardinot G, Ray D, Ernst WG (2004) Stress and carbon uptake in an Amazon forest measured with spaceborne imaging spectroscopy. Proceedings of the National Academy of Sciences of the United States of America 101, 6039–6044.
CrossRef | CAS |

Balzarolo M, Anderson K, Nichol C (2011) Ground-based optical measurements at European flux sites: a review of methods, instruments and current controversies. Sensors 11, 7954–7981.

Barbagallo RP, Oxborough K, Pallett KE, Baker NR (2003) Rapid, non-invasive screening for perturbations of metabolism and plant growth using chlorophyll fluorescence imaging. Plant Physiology 132, 485–493.
CrossRef | CAS |

Barker DH, Adams WW, Demmig-Adams B, Logan BA, Verhoeven AS, Smith SD (2002) Nocturnally retained zeaxanthin does not remain engaged in a state primed for energy dissipation during the summer in two Yucca species growing in the Mojave Desert. Plant, Cell & Environment 25, 95–103.
CrossRef | CAS |

Barron-Gafford G, Martens D, Grieve K, Biel K, Kudeyarov V, McLain JET, Lipson D, Murthy R (2005) Growth of eastern cottonwoods (Populus deltoides) in elevated CO2 stimulates stand-level respiration and rhizodeposition of carbohydrates, accelerates soil nutrient depletion, yet stimulates above and belowground biomass production. Global Change Biology 11, 1220–1233.
CrossRef |

Berry JA (2012) There ought to be an equation for that. Annual Review of Plant Biology in press.

Berry JA, Beerling DJ, Franks PJ (2010) Stomata: key players in the earth system, past and present. Current Opinion in Plant Biology 13, 232–239.
CrossRef |

Biskup B, Küsters R, Scharr H, Walter A, Rascher U (2009) Quantification of plant surface structures from small baseline stereo images to measure the three-dimensional surface from the leaf to canopy scale. Nova Acta Leopoldina NF 96, 31–47.

Briantais JM, Vernotte C, Picaud M, Krause GH (1979) A quantitative study of the slow decline in chlorophyll a fluorescence in isolated chloroplasts. Biochimica et Biophysica Acta 548, 128–138.
CrossRef | CAS |

Bro E, Meyer S, Genty B (1996) Heterogeneity of leaf CO2 assimilation during photosynthetic induction. Plant, Cell & Environment 19, 1349–1358.
CrossRef | CAS |

Brugnoli E, Björkman O (1992) Chloroplast movements in leaves: influence on chlorophyll fluorescence and measurements of light induced absorbance changes related to ΔpH and zeaxanthin formation. Photosynthesis Research 32, 23–35.
CrossRef | CAS |

Bungard RA, Ruban AV, Hibberd JM, Press MC, Horton P, Scholes JD (1999) Unusual carotenoid composition and a new type of xanthophyll cycle in plants. Proceedings of the National Academy of Sciences of the United States of America 96, 1135–1139.
CrossRef | CAS |

Busch F, Huner NPA, Ensminger I (2009) Biochemical constrains limit the potential of the photochemical index as a predictor of effective quantum efficiency of photosynthesis during winter spring transition in Jack pine seedlings. Functional Plant Biology 36, 1016–1026.
CrossRef | CAS |

Chappelle EW, Wood FM, McMurtrey JE, Newcomb WW (1984) Laser-induced fluorescence of green plants. 1: A technique for the remote detection of plant stress and species differentiation. Applied Optics 23, 134–138.
CrossRef | CAS |

Chiariello NR, Mooney HA, Williams K (1989) Growth, carbon allocation and cost of plant tissues. In ‘Plant physiological ecology field methods and instrumentation’. (Eds RW Pearcy, J Ehleringer, HA Mooney, PW Rundel) pp. 327–365. (Chapman & Hall: London)

Chow WS, Aro E-M (2005) Photoinactivation and mechanisms of recovery. In ‘Photosystem II: the light-driven water/plastoquinone oxidoreductase. Advances in photosynthesis and respiration. Vol. 19’. (Eds T Wydrzynski, K Satoh) pp. 627–648. (Springer: Berlin)

Croce R, Weiss S, Bassi R (1999) Carotenoid binding sites of the major light-harvesting complex II of higher plants. Journal of Biological Chemistry 274, 29613–29623.
CrossRef | CAS |

Damm A, Elbers J, Erler E, Gioli B, Hamdi K, Hutjes R, Kosvancova M, Meroni M, Miglietta F, Moersch A, Moreno J, Schickling A, Sonnenschein R, Udelhoven T, van der Linden S, Hostert P, Rascher U (2010) Remote sensing of sun-induced fluorescence to improve modeling of diurnal courses of gross primary production (GPP). Global Change Biology 16, 171–186.
CrossRef |

Daumard F, Champagne S, Fournier A, Goulas Y, Ounis A, Hanocq J-F, Moya I (2010) A field platform for continuous monitoring of canopy fluorescence. IEEE Transactions on Geoscience and Remote Sensing 48, 3358–3368.
CrossRef |

de Bianchi S, Ballottari M, Dall’Osto L, Bassi R (2010) Regulation of plant light harvesting by thermal dissipation of excess energy. Biochemical Society Transactions 38, 651–660.
CrossRef | CAS |

de Pury DGG, Farquhar GD (1997) Simple scaling of photosynthesis from leaves to canopies without the errors of big-leaf models. Plant, Cell & Environment 20, 537–557.
CrossRef |

De Wit CT (1970) Dynamic concepts in biology. In ‘Prediction and measurement of photosynthetic productivity’. pp. 17–23. (Center for Agricultural Publishing and Documentation: Wageningen, The Netherlands)

Demmig B (1996) Survey of thermal energy dissipation and pigment composition in sun and shade leaves. Plant & Cell Physiology 39, 474–482.

Demmig B, Winter K, Krüger A, Czygan F-C (1987) Photoinhibition and zeaxanthin formation in intact leaves; a possible role of the xanthophyll cycle in the dissipation of excess light energy. Plant Physiology 84, 218–224.
CrossRef | CAS |

Demmig-Adams B, Adams WW (1992) Photoprotection and other responses of plants to high light stress. Annual Review of Plant Physiology and Plant Molecular Biology 43, 599–626.
CrossRef | CAS |

Demmig-Adams B, Adams WW (2006) Photoprotection in an ecological context: the remarkable complexity of thermal dissipation. New Phytologist 172, 11–21.
CrossRef | CAS |

Demmig-Adams B, Ebbert V, Zarter CR, Adams WW III (2006) Characteristics and species-dependent employment of flexible versus sustained thermal dissipation and photoinhibition. In ‘Photoprotection, photoinhibition, gene regulation, and environment. Advances in photosynthesis and respiration. Vol. 21’. (Eds B Demmig-Adams, WW Adams III, A Mattoo) pp. 39–48. (Springer: Dordrecht, The Netherlands)

Ebbert V, Adams WW, Matoo A, Solenko A, Demmig-Adams B (2005) Upregulation of a PSII core protein phosphatise inhibitor and sustained D1 protein phosphorylation in zeaxanthin-retaining photoinhibited needles of overwintering Douglas fir. Plant, Cell & Environment 28, 232–240.
CrossRef | CAS |

Esteban R, Jiménez ET, Jiménez MS, Morales D, Hormaetxe K, Becerríl JM, García-Plazaola JI (2007) Dynamics of violaxanthin and lutein-epoxide xanthophyll cycles in Lauraceae tree species under field conditions. Tree Physiology 27, 1407–1414.
CrossRef | CAS |

Esteban R, Jiménez MS, Morales D, Jiménez ET, Hormaetxe K, Becerríl JM, Osmond B, García-Plazaola JI (2008) Short and long-term modulation of the lutein-epoxide and violaxanthin cycles in two species of the Lauraceae: sweet bay laurel (Laurus nobilis L.) and avocado (Persea americana Mill). Plant Biology 10, 288–297.
CrossRef | CAS |

Esteban R, Matsubara S, Jiménez MS, Morales D, Brito P, Lorenzo R, Fernández-Marín B, Becerríl JM, García-Plazaola JI (2010) Operation and regulation of the lutein-epoxide cycle in seedlings of Ocotea foetans. Functional Plant Biology 37, 859–869.
CrossRef | CAS |

Finazzi G, Johnson GN, Dall’Osto L, Joliot P, Wollmann F-A, Bassi R (2004) A zeaxanthin-independent nonphotochemical quenching mechanism localized in the photosystem II core complex. Proceedings of the National Academy of Sciences of the United States of America 101, 12375–12380.
CrossRef | CAS |

Finkel E (2009) With ‘phenomics’, plant scientists hope to shift breeding into overdrive. Science 325, 380–381.
CrossRef | CAS |

Flexas J, Escalona J-M, Evian S, Gulías J, Moya I, Osmond CB, Medrano H (2002) Steady-state chlorophyll fluorescence (F S) measurements as a tool to follow variations of net CO2 assimilation and stomatal conductance during water stress in C3 plants. Physiologia Plantarum 114, 231–240.
CrossRef | CAS |

Förster B, Osmond CB, Boynton JE (2001) Very high light resistant mutants of Chlamydomonas reinhardtii: responses of photosystem II, nonphotochemical quenching and xanthophyll pigments to light and CO2. Photosynthesis Research 67, 5–15.
CrossRef |

Förster B, Osmond CB, Pogson BJ (2005) Improved survival of very high light and oxidative stress is conferred by spontaneous gain-of-function mutations in Chlamydomonas. Biochimica et Biophysica Acta (BBA) – Bioenergetics 1709, 45–57.
CrossRef |

Förster B, Osmond CB, Pogson BJ (2009) De novo synthesis and degradation of Lx and V cycle pigments during shade and sun acclimation in avocado leaves. Plant Physiology 149, 1179–1195.
CrossRef |

Förster B, Osmond CB, Pogson BJ (2011) Lutein from de-epoxidation of lutein epoxide replaces zeaxanthin to sustain enhanced capacity for nonphotochemical chlorophyll fluorescence quenching in avocado shade leaves in the dark. Plant Physiology 156, 393–403.
CrossRef |

Furbank RT (2009) Plant phenomics: from gene to form and function. Functional Plant Biology 36, v–vi.
CrossRef |

Gamon JA, Field CB, Bilger O, Björkman O, Fredeen A, Peňuelas J (1990) Remote sensing of the xanthophyll cycle and chlorophyll fluorescence in sunflower leaves and canopies. Oecologia 85, 1–7.
CrossRef |

Garbulsky MF, Peñuelas J, Gamon J, Inoue Y, Filella I (2011) The photochemical reflectance index (PRI) and the remote sensing of leaf, canopy and ecosystem radiation use efficiencies. A review and meta-analysis. Remote Sensing of Environment 115, 281–297.
CrossRef |

García-Plazoala JI, Olano JM, Hernández A, Becerríl JM (2003) The operation of the lutein-epoxide cycle correlates with energy dissipation. Functional Plant Biology 30, 319–324.
CrossRef |

García-Plazoala JI, Matsubara S, Osmond CB (2007) The lutein-epoxide cycle in higher plants: its relationship to other xanthophyll cycles and possible functions. Functional Plant Biology 34, 759–773.
CrossRef |

Genty B, Briantais J-M, Baker NR (1989) The relationship between the quantum yield of photosynthesis, electron transport, and quenching of chlorophyll fluorescence. Biochimica Biophysica Acta (BBA) – General Subjects 990, 87–92.
CrossRef | CAS |

Gilmore AM, Shinkarev VP, Hazlett TL, Govindjee (1998) Quantitative analysis of intrathylakoid pH and xanthophyll cycle pigments on chlorophyll a fluorescence lifetime distributions and intensity in thylakoids. Biochemistry 37, 13 582–13 593.
| CAS |

Grace J, Nichol C, Disney M, Lewis P, Quaife T, Bower P (2007) Can we measure terrestrial photosynthesis from space directly, using spectral reflectance and fluorescence? Global Change Biology 13, 1484–1497.
CrossRef |

Harte J (2002) Towards a synthesis of the Newtonian and Darwinian worldviews. Physics Today 55, 29–32.
CrossRef |

Hilker T, Coops NC, Hall FG, Nichol CJ, Lyapustin A, Black TA, Wulder MA, Leuning R, Barr A, Hollinger DY, Munger B, Tucker CJ (2011) Inferring terrestrial photosynthetic light use efficiency of temperate forest ecosystems from space. Journal of Geophysical Research 116, G03014
CrossRef |

Horton P (1983) Relationships between electron transport and carbon assimilation: simultaneous measurement of chlorophyll fluorescence, transthylakoid pH gradient and O2 evolution in isolated chloroplasts. Proceedings of the Royal Society of London, Series B 217, 405–416.
CrossRef | CAS |

Horton P, Ruban AV, Walters RG (1996) Regulation of light harvesting in green plants. Annual Review of Plant Physiology and Plant Molecular Biology 47, 655–684.
CrossRef | CAS |

Huner NPA, Ivanov AG, Sane PV, Pocock T, Król M, Balseris A, Rosso D, Savich LV, Hurry VM, Öquist G (2005) Photoprotection of photosystem II: reaction center quenching versus antenna quenching. In ‘Photoprotection, photoinhibition, gene regulation, and environment. Advances in photosynthesis and respiration. Vol. 21’. (Eds B Demmig-Adams, WW Adams III, A Mattoo) pp. 155–173. (Springer: Dordrecht, The Netherlands)

Johnson MP, Davidson PA, Ruban AV, Horton P (2008) The xanthophyll pool size controls the kinetics of nonphotochemical chlorophyll quenching in Arabidopsis thaliana. FEBS Letters 582, 262–266.
CrossRef | CAS |

Johnson MP, Pérez-Bueno ML, Zia A, Horton P, Ruban AV (2009) The zeaxanthin-independent and zeaxanthin-dependent qE components of nonphotochemical quenching involve common conformational changes within the photosystem II antenna in Arabidopsis. Plant Physiology 149, 1061–1075.
CrossRef | CAS |

Joiner J, Yoshida Y, Vasilkov AP, Yoshida Y, Corp LA, Middleton EM (2011) First observations of global and seasonal terrestrial chlorophyll fluorescence from space. Biogeosciences 8, 637–651.
CrossRef | CAS |

Kamen MD (1963) ‘Primary processes in photosynthesis.’ (Academic Press: New York)

Kingsland SE (2009) Frits Went’s atomic age greenhouse: the changing labscape on the lab-field border. Journal of the History of Biology 42, 289–324.
CrossRef |

Kirschbaum MUF, Pearcy RW (1988) Concurrent measurements of O2 and CO2 exchange during lightflecks in Alocasia macrorrhiza (L.) G. Don. Planta 174, 527–533.
CrossRef | CAS |

Kolber Z, Prasil O, Falkowski PG (1998) Measurements of variable chlorophyll fluorescence using fast repetition rate techniques: defining methodology and experimental protocols. Biochimica et Biophysica Acta – Bioenergetics 1367, 88–106.
CrossRef | CAS |

Kolber Z, Klimov D, Ananyev G, Rascher U, Berry J, Osmond B (2005) Measuring photosynthetic parameters at a distance: laser induced fluorescence transient (LIFT) method for remote measurements of PSII in terrestrial vegetation. Photosynthesis Research 84, 121–129.
CrossRef | CAS |

Krause GH, Weis E (1991) Chlorophyll fluorescence and photosynthesis: the basics. Annual Review of Plant Physiology and Plant Molecular Biology 42, 313–349.
CrossRef | CAS |

Laisk A, Oja V (1998) ‘Dynamics of leaf photosynthesis. Techniques in plant sciences 1.’ (CSIRO Publishing: Melbourne)

Law RD, Crafts-Brandner SJ (1999) Inhibition and acclimation of photosynthesis to heat stress is closely correlated with activation of ribulose-1,5-bisposphate carboxylase/oxygenase. Plant Physiology 120, 173–182.
CrossRef | CAS |

Leuchner M, Fabian P, Werner H (2005) Spectral multichannel monitoring of radiation within a mature mixed forest. Plant Biology 7, 619–627.
CrossRef | CAS |

Li X-P, Gilmore AM, Niyogi K (2002) Molecular and global time-resolved analysis of a psbS gene dosage effect on pH- and xanthophyll cycle-dependent nonphotochemical quenching in photosystem II. Journal of Biological Chemistry 277, 33590–33597.
CrossRef | CAS |

Li Z, Ahn TK, Avenson TJ, Ballottari M, Cruz JA, Kramer DM, Bassi R, Fleming GR, Keasling JD, Niyogi KK (2009) Lutein accumulation in the absence of zeaxanthin restores nonphotochemical chlorophyll quenching in the Arabidopsis thaliana npq1 mutant. The Plant Cell 21, 1798–1812.
CrossRef | CAS |

Lin G, Marino BDV, Wei Y, Adams J, Tubiello F, Berry JA (1998) An experimental and model study of the responses in ecosystem exchanges to increasing CO2 concentrations using a tropical rainforest mesocosm. Australian Journal of Plant Physiology 25, 547–556.
CrossRef |

Lloyd J, Grace J, Miranda AC, Meir P, Miranda D, Wong SC, Miranda HS, Wright I, Gash J, McIntyre J (1995) A simple calibrated model of Amazon rainforest productivity based on leaf biochemical properties. Plant, Cell & Environment 18, 1129–1145.
CrossRef |

Logan BA, Barker DH, Adams WW, Demmig-Adams B (1997) The response of xanthophyll cycle-dependent energy dissipation in Alocasia brisbanensis to sunflecks in a subtropical rainforest. Australian Journal of Plant Physiology 24, 27–33.
CrossRef |

Logan BA, Adams WW, Demmig-Adams B (2007) Avoiding common pitfalls of chlorophyll fluorescence analysis under field conditions. Functional Plant Biology 34, 853–859.
CrossRef | CAS |

Losciale P, Oguchi R, Hendrickson L, Hope AB, Corelli-Grappadelli L, Chow WS (2008) A rapid whole-tissue determination of the functional fraction of PSII after photoinhibition of leaves based on flash-induced P700 reduction kinetics. Physiologia Plantarum 132, 23–32.
| CAS |

Louis J, Ounis A, Ducruet JM, Evian S, Laurila T, Thum T, Aurela M, Wingsle G, Alonso L, Pedros R, Moya I (2005) Remote sensing of sunlight-induced chlorophyll fluorescence and reflectance of Scots pine in boreal forest during spring recovery. Remote Sensing of Environment 96, 37–48.
CrossRef |

Lovelock CE, Jebb M, Osmond CB (1994) Photoinhibition and recovery in tropical species: response to disturbance. Oecologia 97, 297–307.

Lucieer A, Robinson S, Bergstrom D (2010) Aerial ‘OktoKopter’ to map Antarctic Moss. Australian Antarctic Magazine 19, 1–3.

Ludlow MM, Björkman O (1984) Paraheliotropic leaf movements in Siratro as a protective mechanism against drought-induced damage to primary photosynthetic reactions: damage by excessive light. Planta 161, 505–518.
CrossRef |

Matsubara S, Chow WS (2004) Populations of photoinactivated photosystem II characterized by chlorophyll fluorescence lifetime in vivo. Proceedings of the National Academy of Sciences of the United States of America 101, 18234–18239.
CrossRef | CAS |

Matsubara S, Gilmore AM, Osmond CB (2001) Diurnal and acclimatory responses of violaxanthin and lutein epoxide in the Australian mistletoe Amyema miquelii. Australian Journal of Plant Physiology 28, 793–800.
| CAS |

Matsubara S, Morosinotto T, Bassi R, Christian A-L, Fischer-Schleibs E, Lüttge U, Orthen B, Franco AC, Scarano FR, Förster B, Pogson B, Osmond CB (2003) Occurrence of the lutein-epoxide cycle in mistletoes of the Loranthaceae and Viscaeae. Planta 217, 868–879.
CrossRef | CAS |

Matsubara S, Naumann M, Martin R, Nichol C, Rascher U, Morosinotto T, Bassi R, Osmond B (2005) Slowly reversible de-epoxidation of lutein epoxide in deep shade leaves of a tropical tree legume may ‘lock-in’ lutein-based photoprotection during acclimation to strong light. Journal of Experimental Botany 56, 461–468.
CrossRef | CAS |

Matsubara S, Morosinotto T, Osmond B, Bassi R (2007) Short- and long-term operation of the lutein-epoxide cycle in light-harvesting antenna complexes. Plant Physiology 144, 926–941.
CrossRef | CAS |

Matsubara S, Krause GH, Seltman M, Virgo A, Kursar TA, Jahns P, Winter K (2008) Lutein-epoxide cycle, light harvesting and photoprotection in species of the tropical tree genus Inga. Plant, Cell & Environment 31, 548–561.
CrossRef | CAS |

Matsubara S, Krause GH, Arandac J, Virgoc A, Beisel K, Jahns P, Winter K (2009) Sun-shade patterns of leaf carotenoid composition in 86 species of neotropical forest plants. Functional Plant Biology 36, 20–36.
CrossRef | CAS |

Matsubara S, Chen Y-C, Caliandro R, Govindjee , Clegg RM (2011) Photosystem II fluorescence lifetime imaging in avocado leaves: contributions of lutein-epoxide and violaxanthin cycles to fluorescence quenching. Journal of Photochemistry and Photobiology. B, Biology 104, 271–284.
CrossRef | CAS |

Maxwell K, Johnson GN (2000) Chlorophyll fluorescence – a practical guide. Journal of Experimental Botany 51, 659–668.
CrossRef | CAS |

Meroni M, Rossini M, Guanter L, Alonso L, Rascher U, Colombo R, Moreno J (2009) Remote sensing of solar induced chlorophyll fluorescence: review of methods and applications. Remote Sensing of Environment 113, 2037–2051.
CrossRef |

Morison JIL, Gallouët E, Lawson T, Cornic G, Baker NR (2005) Lateral diffusion of CO2 in leaves is not sufficient to support photosynthesis. Plant Physiology 139, 254–266.
CrossRef | CAS |

Murthy R, Barron-Gafford G, Dougherty PM, Engel VC, Grieve K, Handley L, Klimas C, Potosnak MJ, Zarnoch SJ, Zhang J (2005) Increased leaf area dominates carbon flux response to elevated CO2 in stands of Populus deltoides (Bartr.) and underlies a switch from canopy light-limited CO2 influx in well-watered treatments to individual leaf, stomatally-limited influx under water stress. Global Change Biology 11, 716–731.
CrossRef |

Nichol CJ, Lloyd J, Shibistova O, Arneth A, Roser C, Knohl A, Matsubara S, Grace J (2002) Remote sensing of photosynthetic light use efficiency of Siberian boreal forest. Tellus. Series B, Chemical and Physical Meteorology 54, 677–687.
CrossRef |

Nichol CJ, Rascher U, Matsubara S, Osmond CB (2006) Detecting quantum yield and non-photochemical quenching in an experimental mangrove canopy using optical remote sensing, chlorophyll fluorescence and leaf biochemistry. Trees – Structure and Function 20, 9–15.
CrossRef | CAS |

Niinemets Ü (2007) Photosynthesis and resource distribution through plant canopies. Plant, Cell & Environment 30, 1052–1071.
CrossRef | CAS |

Niinemets Ü, Bilger W, Kull O, Tenhunen JD (1998) Acclimation to high irradiance in temperate deciduous trees in the field: changes in xanthophyll pool size and photosynthetic capacity along a canopy light gradient. Plant, Cell & Environment 21, 1205–1218.
CrossRef | CAS |

Nowotny H (2011) Contribution of the ERC Scientific Council to the consultation on the common strategic framework for EU research and innovation funding. ERC Scientific Council Position Paper. 16 May 2011.

Ögren E, Baker NR (1985) Evaluation of a technique for the measurement of chlorophyll fluorescence from leaves in continuous light. Plant, Cell & Environment 8, 539–547.
CrossRef |

Omasa K, Takayama K (2003) Simultaneous measurements of stomatal conductance, non-photochemical quenching and photochemical yield of photosystem II in intact leaves by thermal and chlorophyll fluorescence imaging. Plant & Cell Physiology 44, 1290–1300.
CrossRef | CAS |

Öquist G, Huner NPA (2003) Photosynthesis of overwintering evergreen plants. Annual Review of Plant Physiology and Plant Molecular Biology 54, 329–355.

Osmond CB (1989) Photosynthesis from the molecule to the biosphere: a challenge for integration. In ‘Photosynthesis’. (Ed. WR Briggs) pp. 5–17. (Alan R. Liss: New York)

Osmond CB, Anderson DJ, Bjorkman O (1980) ‘Physiological processes in plant ecology. Towards a synthesis with Atriplex. Ecological studies Vol. 36’. (Springer-Verlag: Heidelberg)

Osmond B, Ananyev G, Berry JA, Langdon C, Kolber Z, Lin G, Monson R, Nichol C, Rascher U, Schurr U, Smith S, Yakir D (2004) Changing the way we think about global change research: scaling up in experimental ecosystem science. Global Change Biology 10, 393–407.
CrossRef |

Ounis A, Evian S, Flexas J, Tosti S, Moya A (2001) Adaptation of a PAM fluorometer for remote sensing of chlorophyll fluorescence. Photosynthesis Research 68, 113–120.
CrossRef | CAS |

Pearcy RW (1988) Photosynthetic utilization of lightflecks by understorey plants. Australian Journal of Plant Physiology 15, 223–238.
CrossRef |

Pearcy RW (1990) Sunflecks and photosynthesis in plant canopies. Annual Review of Plant Physiology and Plant Molecular Biology 41, 421–453.
CrossRef | CAS |

Pearcy RW, Gross LJ, He D (1997) An improved dynamic model of photosynthesis for estimation of carbon gain in sunfleck light regimes. Plant, Cell & Environment 20, 411–424.
CrossRef |

Pearcy RW, Muraoka H, Valladares F (2005) Crown architecture in sun and shade environments: assessing trade-offs with a three-dimensional simulation model. New Phytologist 166, 791–800.
CrossRef |

Pennington TD (1997) ‘The genus Inga: Botany.’ (The Royal Botanic Gardens: Kew, UK)

Pennington TD, Fernandes ECM (1998) ‘The genus Inga: utilization.’(The Royal Botanic Gardens: Kew, UK)

Peñuelas J, Garbulsky MF, Filella I (2011) Photochemical reflectance index (PRI) and remote sensing of plant CO2 uptake. New Phytologist 191, 596–599.
CrossRef |

Pfündel E, Renganathan M, Gilmore AM, Yamamoto HY, Dilley RA (1994) Intrathylakoid pH in isolated pea chloroplasts as probed by violaxanthin de-epoxidation. Plant Physiology 106, 1647–1658.

Pieruschka R, Chavarria-Krauser A, Cloos K, Scharr H, Schurr U, Jahnke S (2008) Photosynthesis can be enhanced by lateral CO2 diffusion inside leaves over distances of several millimeters. New Phytologist 178, 335–347.
CrossRef | CAS |

Pieruschka R, Rascher U, Klimov D, Kolber ZS, Berry JA (2009) Optical remote sensing and laser induced fluorescence transients (LIFT) to quantify the spatio temporal functionality of plant canopies. Nova Acta Leopoldina NF 96, 49–62.

Pieruschka R, Klimov D, Kolber ZS, Berry JA (2010) Monitoring of cold and light stress impact on photosynthesis by using the laser induced fluorescence transient (LIFT) approach. Functional Plant Biology 37, 395–402.
CrossRef |

Pogson BJ, Niyogi KK, Björkman O, dellaPenna D (1998) Altered xanthophyll composition adversely affect chlorophyll accumulation and non-photochemical quenching in Arabidopsis mutants. Proceedings of the National Academy of Sciences of the United States of America 95, 13324–13329.
CrossRef | CAS |

Poorter H, Pepin S, Rijkers T, de Jong Y, Evans JR, Körner C (2006) Construction costs, chemical composition and payback time of high- and low-irradiance leaves. Journal of Experimental Botany 57, 355–371.
CrossRef | CAS |

Poorter H, Niinemets U, Walter A, Fiorani F, Schurr U (2010) A method to construct dose-response curves for a wide range of environmental factors and plant traits by means of a meta-analysis of phenotypic data. Journal of Experimental Botany 61, 2043–2055.
CrossRef | CAS |

Porcar-Castell A, Pfündel E, Korhonen JFJ, Juurola E (2008) A new monitoring PAM fluorometer (MONI-PAM) to study the short- and long-term acclimation of photosystem II in field conditions. Photosynthesis Research 96, 173–179.
CrossRef | CAS |

Rabinowitch HD, Budowski P, Kedar N (1975) Carotenoids and epoxide cycles in mature–green tomatoes. Planta 122, 91–97.
CrossRef | CAS |

Rascher U, Bobich EG, Lin G-H, Walter A, Morris T, Naumann M, Nichol CJ, Pierce D, Bil’ K, Kudeyarov V, Berry JA (2004) Functional diversity of photosynthesis during drought in model tropical rainforest-the contributions of leaf area, photosynthetic electron transport and stomatal conductance to reduction in net ecosystem carbon exchange. Plant, Cell & Environment 27, 1239–1256.
CrossRef | CAS |

Rascher U, Nichol CJ, Small C, Hendricks L (2007) Monitoring spatio-temporal dynamics of photosynthesis with a portable hyperspectral imaging system: a case study to quantify the spatio-temporal effects of drought on the photosynthetic efficiency of leaves of four tropical tree species. Photogrammetric Engineering and Remote Sensing 73, 45–56.

Rascher U, Agati G, Alonso L, Cecchi G, Champagne S, et al (2009) CEFLES2: the remote sensing component to quantify photosynthetic efficiency from the leaf to the region by measuring sun-induced fluorescence in the oxygen absorption bands. Biogeosciences 6, 1181–1198.
CrossRef | CAS |

Rascher U, Freiberg M, Lüttge U (2011) Functional diversity of photosynthetic light use of sixteen vascular epiphyte species under fluctuating irradiance in the canopy of a giant Virola michelii (Myristicaceae) tree in the tropical lowland forest of French Guyana. Frontiers in Functional Ecology in press.

Reich PB, Falster DS, Ellworth DS, Wright IJ, Westoby M, Oleksyn J, Lee TD (2009) Controls on declining carbon balance with leaf age among 10 woody species in Australian woodland: do leaves have zero daily net carbon balance when they die? New Phytologist 183, 153–166.
CrossRef | CAS |

Robinson SA, Osmond CB (1994) Internal gradients of chlorophyll and carotenoid pigments in relation to photoprotection in thick leaves of plants with Crassulacean acid metabolism. Australian Journal of Plant Physiology 21, 497–506.
CrossRef | CAS |

Russell AW, Critchley C, Robinson SA, Franklin LA, Seaton GGR, Chow WS, Anderson JM, Osmond CB (1995) Photosystem II regulation and dynamics of the chloroplast D1 protein in Arabidopsis leaves during photosynthesis and photoinhibition. Plant Physiology 107, 943–952.
| CAS |

Schreiber U, Schliwa U, Bilger W (1986) Continuous recording of photochemical and non-photochemical chlorophyll fluorescence quenching with a new type of modulation fluorometer. Photosynthesis Research 10, 51–62.
CrossRef | CAS |

Sellers PJ, Berry JA, Collatz GJ, Field CB, Hall FG (1992) Canopy reflectance, photosynthesis, and transpiration. III. A reanalysis using improved leaf models and a new canopy integration scheme. Remote Sensing of Environment 42, 187–216.
CrossRef |

Shen Y-K, Chow WS, Park Y-I, Anderson JM (1996) Photoinactivation of photosystem II by cumulative exposure to short light pulses during the induction period of photosynthesis. Photosynthesis Research 47, 51–59.
CrossRef | CAS |

Siebke K, Weis E (1995) Assimilation images of Glechoma hederacea: analysis of non-synchronous stomata related oscillations. Planta 196, 155–165.
CrossRef | CAS |

Sims DA, Gamon JA (2002) Relationships between leaf pigment content and spectral reflectance across a wide range of species, leaf structures and developmental stages. Remote Sensing of Environment 81, 337–354.
CrossRef |

Terashima I (1992) Anatomy of non-uniform photosynthesis. Photosynthesis Research 31, 195–212.
CrossRef | CAS |

Thayer SS, Björkman O (1990) Leaf xanthophyll content and composition in sun and shade determined by HPLC. Photosynthesis Research 23, 331–343.
CrossRef | CAS |

Tolkien JRR (2001) Leaf by Niggle. In ‘Tree and leaf’. pp. 93–118. (Harper Collins Publishers: London)

Trueman R, Gonzalez-Meler MA (2005) Accelerated belowground C losses in a managed agriforest ecosystem exposed to elevated carbon dioxide concentrations. Global Change Biology 11, 1258–1271.
CrossRef |

von Caemmerer S, Osmond B (2009) Testing the functional implications of photosynthetic heterogeneity in leaves of C4 plants: reductionism during scale expansion. Nova Acta Leopoldina NF 96, 73–91.
| CAS |

Weis E (1981) Reversible heat inactivation of the Calvin cycle: a possible mechanism of the temperature regulation of photosynthesis. Planta 151, 33–39.
CrossRef | CAS |

Weis E, Berry JA (1988) Plants and high temperature stress. Society for Experimental Biology Symposium 42, 329–342.
| CAS |

Whiley AW, Schaffer B, Wolstenholme BN (2002) ‘The avocado: botany, production and uses.’ (CABI Publishing: Wallingford, UK)

Wright IJ, Reich PB, Westoby M, Ackerly DD, Baruch Z, et al (2004) The worldwide leaf economics spectrum. Nature 428, 821–827.
CrossRef | CAS |

Yamamoto H, Nakayama TOM, Chichester CO (1962) Studies on the light and dark interconversions of leaf xanthophylls. Archives of Biochemistry and Biophysics 97, 168–173.
CrossRef | CAS |

Zarter CR, Adams WW, Ebbert V, Adamska I, Jansson S, Demmig-Adams B (2006) Winter acclimation of PsbS and related proteins in the evergreen Arctostaphylos urva-ursi as influenced by altitude and light environment. Plant, Cell & Environment 29, 869–878.
CrossRef | CAS |


   
 
    


 
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