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REVIEW
Contents Vol 61(2)

Observational methods used in marine spatial monitoring of fishes and associated habitats: a review

Hannah M. Murphy A B C D and Gregory P. Jenkins A B
+ Author Affiliations
- Author Affiliations

A Marine and Freshwater Fisheries Research Institute, Department of Primary Industries, Queenscliff, Vic. 3225, Australia.

B Department of Zoology, University of Melbourne, Parkville, Vic. 3052, Australia.

C Present address: Department of Zoology, The University of Melbourne, Parkville, Vic. 3052, Australia.

D Corresponding author. Email: h.murphy@pgrad.unimelb.edu.au

Marine and Freshwater Research 61(2) 236-252 https://doi.org/10.1071/MF09068
Submitted: 27 March 2009  Accepted: 12 August 2009   Published: 25 February 2010

Abstract

Management areas are used in marine spatial planning to conserve biodiversity of marine ecosystems and to protect fish from fishing pressure. To evaluate the effectiveness of these protected areas, observational techniques are used to determine densities, sizes, biomass, habitat types and distribution of fish species in and around management areas. Two types of observational techniques are used in spatial monitoring: (1) fishery-independent techniques, which include underwater visual census (UVC), underwater video, remote sensing, acoustics, and experimental catch and effort data; and (2) fishery-dependent techniques, which include catch, effort and catch per unit effort data from commercial and recreational fisheries. This review summarises the applications, advantages, disadvantages and biases of each of these observational categories and highlights emerging technologies. The main finding from this review was that a combination of observational techniques, rather than a single method, was the most effective approach to marine spatial monitoring. For example, a combination of hydroacoustics for habitat mapping and UVC or video for fish surveys was one of the most cost-effective and efficient means of obtaining fish-habitat linkages and fish assemblage data. There are also emerging technologies that could increase the precision and efficiency of monitoring surveys. There is a need for continued development of non-intrusive technology for marine monitoring studies.

Additional keywords: fisheries-dependent surveys, fisheries-independent surveys, management areas, marine habitat.


Acknowledgements

We thank Neil Hutchinson, Andy Longmore and two anonymous reviewers for their thoughtful comments on this review. This work was conducted as part of Fisheries Research and Development Corporation Project 2004/005. Funding was provided by FRDC, Fisheries Victoria, CSIRO and the Tasmanian Aquaculture and Fisheries Institute.


References

Abesamis, R. A. , and Russ, G. R. (2005). Density-dependent spillover from a marine reserve: long-term evidence. Ecological Applications 15, 1798–1812.
| Crossref | GoogleScholarGoogle Scholar | Ball D., and Blake S. (2007). Shallow water habitat mapping at Victorian marine national parks and marine sanctuaries, Volume 1: Western Victoria. Parks Victoria Technical Series No. 36. Parks Victoria, Melbourne.

Baron, R. M. , Jordan, L. K. B. , and Spieler, R. E. (2004). Characterization of the marine fish assemblage associated with the nearshore hardbottom of Broward County, Florida, USA. Estuarine, Coastal and Shelf Science 60, 431–443.
| Crossref | GoogleScholarGoogle Scholar | Cappo M., Harvey E., Malcolm H., and Speare P. (2003). Potential of video techniques to monitor diversity, abundance and size of fish in studies of Marine Protected Areas. In ‘Aquatic Protected Areas – What Works Best and How Do We Know?’ (Eds J. P. Beumer, A. Grant and D. C. Smith.) pp. 455–464. (World Congress on Aquatic Protected Areas Proceedings: Cairns, Australia.)

Cappo, M. , Speare, P. , and De’ath, G. (2004). Comparison of baited remote underwater video stations (BRUVS) and prawn (shrimp) trawls for assessment of fish biodiversity in interreefal areas of the Great Barrier Reef Marine Park. Journal of Experimental Marine Biology and Ecology 302, 123–152.
| Crossref | GoogleScholarGoogle Scholar | Cappo M., Harvey E., and Shortis M. (2007b) Counting and measuring fish with baited video techniques – an overview. In ‘Proceedings of the 2006 Australian Society of Fish Biology Conference and Workshop Cutting-edge Technologies in Fish and Fisheries Science, Hobart, August 2006’. (Eds J. M. Lyle, D. M. Furlani and C. D. Buxton.) pp. 101–114. (ASFB: Hobart.)

Carbines, G. , and Cole, R. G. (2009). Using a remote drift underwater video (DUV) to examine dredge impacts on demersal fishes and benthic habitat complexity in Foveaux Strait, Southern New Zealand. Fisheries Research 96, 230–237.
| Crossref | GoogleScholarGoogle Scholar | Committee on Fish Stock Assessment Methods (1998). ‘Improving Fish Stock Assessments.’ (National Academy Press: Washington, D.C.)

Consoli, P. , Azzurro, E. , Sara, G. , Ferraro, M. , and Andaloro, F. (2007). Fish diversity associated with gas platforms: Evaluation of two underwater visual census techniques. Ciencias Marinas 33, 121–132.
Cote I. M., and Perrow M. R. (2006). Fish. In ‘Ecological Census Techniques: A Handbook’. (Ed. W. J. Sutherland.) pp. 250–277. (Cambridge University Press: Cambridge.)

Dayton, P. K. , Sala, E. , Tegner, M. J. , and Thrush, S. (2000). Marine reserves: Parks, baselines, and fishery enhancement. Bulletin of Marine Science 66, 617–634.
Edwards A. J. (Ed.) (2000). ‘Remote Sensing Handbook for Tropical Coastal Management.’ (UNESCO: Paris.)

Egli, D. P. , and Babcock, R. C. (2004). Ultrasonic tracking reveals multiple behavioural modes of snapper (Pagrus auratus) in a temperate no-take marine reserve. ICES Journal of Marine Science 61, 1137–1143.
| Crossref | GoogleScholarGoogle Scholar | Gleason A. C. R., Eklund A., Reid R. P., and Koch V. (2006). Acoustic signatures of the seafloor: tools for predicting grouper habitat. In ‘Emerging Technologies for Reef Fisheries Research and Management. NOAA Professional Paper NMFS 5’. (Ed. J. C. Taylor.) pp. 38–47. (Scientific Publications Office: Seattle, WA, USA.)

Guidetti, P. (2006). Marine reserves reestablish lost predatory interactions and cause community changes in rocky reefs. Ecological Applications 16, 963–976.
| Crossref | GoogleScholarGoogle Scholar | PubMed | Johnston S. V., Rivera J. A., Rosario A., Timko M. A., Nealson P. A., et al. (2006). Hydroacoustic evaluation of spawning red hind (Epinephelus guttatus) aggregations along the coast of Puerto Rico in 2002 and 2003. In ‘Emerging Technologies for Reef Fisheries Research and Management. NOAA Professional Paper NMFS 5’. (Ed. J. C. Taylor.) pp. 10–17. (Scientific Publications Office: Seattle, WA, USA.)

Jones, R. S. , and Thompson, M. J. (1978). Comparison of Florida reef fish assemblages using a rapid visual technique. Bulletin of Marine Science 28, 159–172.
Mumby P. J., and Green E. (2000). Mapping seagrass beds. In ‘Remote Sensing Handbook for Tropical Coastal Management’. (Ed. A. J. Edwards.) pp. 175–182. (UNESCO: Paris.)

Mumby, P. J. , Green, E. P. , Edwards, A. J. , and Clark, C. D. (1999). The cost-effectiveness of remote sensing for tropical coastal resources assessment and management. Journal of Environmental Management 55, 157–166.
| Crossref | GoogleScholarGoogle Scholar | Rand P. S., Taylor J. C., and Eggleston D. B. (2006). A video method for quantifying size distribution, density, and three-dimensional spatial structure of reef fish spawning aggregations. In ‘Emerging Technologies for Reef Fisheries Research and Management. NOAA Professional Paper NMFS 5’. (Ed. J. C. Taylor.) pp. 4–9. (Scientific Publications Office: Seattle, WA, USA.)

Riegl, B. M. , and Purkis, S. J. (2005). Detection of shallow subtidal corals from IKONOS satellite and QTC View (50, 200 kHz) single-beam sonar data (Arabian Gulf; Dubai, UAE). Remote Sensing of Environment 95, 96–114.
| Crossref | GoogleScholarGoogle Scholar | Rivera J. A., Prada M. C., Arsenault J., Moody G., and Benoit N. (2006). Detecting fish aggregations from reef habitats mapped with high resolution side scan sonar imagery. In ‘Emerging Technologies for Reef Fisheries Research and Management. NOAA Professional Paper NMFS 5’. (Ed. J. C. Taylor.) pp. 88–104. (Scientific Publications Office: Seattle, WA, USA.)

Rooper, C. N. , and Zimmermann, M. (2007). A bottom-up methodology for integrating underwater video and acoustic mapping for seafloor substrate classification. Continental Shelf Research 27, 947–957.
| Crossref | GoogleScholarGoogle Scholar | Shortis M., Harvey E., and Seager J. (2007). A review of the status and trends in underwater videometric measurement. Invited paper, SPIE Conference 6491, Videometrics IX, IS&T/SPIE Electronic Imaging.

Soto, I. , Andrefouet, S. , Hu, C. , Muller-Karger, F. E. , Wall, C. C. , Sheng, J. , and Hatcher, B. G. (2009). Physical connectivity in the Mesoamerican Barrier Reef System inferred from 9 years of ocean color observations. Coral Reefs 28, 415–425.
| Crossref | GoogleScholarGoogle Scholar | Taylor J. C., Eggleston D. B., and Rand P. S. (2006). Nassau grouper (Epinephelus striatus) spawning aggregations: hydroacoustic surveys and geostatistical analysis. In ‘Emerging Technologies for Reef Fisheries Research and Management. NOAA Professional Paper NMFS 5’. (Ed. J. C. Taylor.) pp. 18–25. (Scientific Publications Office: Seattle, WA, USA.)

Thresher, R. E. , and Gunn, J. S. (1986). Comparative analysis of visual census techniques for highly mobile, reef-associated piscivores (Carangidae). Environmental Biology of Fishes 17, 93–116.
| Crossref | GoogleScholarGoogle Scholar |

Vanderstraete, T. , Goossens, R. , and Ghabour, T. K. (2006). The use of multi-temporal Landsat images for the change detection of the coastal zone near Hurghada, Egypt. International Journal of Remote Sensing 27, 3645–3655.
| Crossref | GoogleScholarGoogle Scholar |

Wabnitz, C. C. , Andrefouet, S. , Torres-Pulliza, D. , Muller-Karger, F. E. , and Kramer, P. A. (2008). Regional-scale seagrass habitat mapping in the wider Caribbean region using Landsat sensors: Applications to conservation and ecology. Remote Sensing of Environment 112, 3455–3467.
| Crossref | GoogleScholarGoogle Scholar |

Watson, D. L. , and Harvey, E. S. (2007). Behaviour of temperate and sub-tropical reef fishes towards a stationary SCUBA diver. Marine and Freshwater Behaviour and Physiology 40, 85–103.
| Crossref | GoogleScholarGoogle Scholar |

Watson, D. L. , Harvey, E. S. , Anderson, M. J. , and Kendrick, G. A. (2005). A comparison of temperate reef fish assemblages recorded by three underwater stereo-video techniques. Marine Biology 148, 415–425.
| Crossref | GoogleScholarGoogle Scholar |

Watson, D. L. , Harvey, E. S. , Kendrick, G. A. , Nardi, K. , and Anderson, M. J. (2007). Protection from fishing alters the species composition of fish assemblages in a temperate-tropical transition zone. Marine Biology 152, 1197–1206.
| Crossref | GoogleScholarGoogle Scholar |

Wells, R. J. D. , Boswell, K. A. , Cowan, J. H. , and Patterson, W. F. (2008). Size selectivity of sampling gears targeting red snapper in the northern Gulf of Mexico. Fisheries Research 89, 294–299.
| Crossref | GoogleScholarGoogle Scholar |

Wetherbee, B. M. , Holland, K. N. , Meyer, C. G. , and Lowe, C. G. (2004). Use of a marine reserve in Kaneohe Bay, Hawaii by the giant trevally, Caranx ignobilis. Fisheries Research 67, 253–263.
| Crossref | GoogleScholarGoogle Scholar |

White, W. H. , Harborne, A. R. , Sotheran, I. S. , Walton, R. , and Foster-Smith, R. L. (2003). Using acoustic ground discrimination system to map coral reef benthic classes. International Journal of Remote Sensing 24, 2641–2660.
| Crossref | GoogleScholarGoogle Scholar |

Whitfield, P. E. , Hare, J. A. , David, A. W. , Harter, S. L. , Munoz, R. C. , and Addison, C. M. (2007). Abundance estimates of the Indo-Pacific lionfish Pterois volitans/miles complex in the Western North Atlantic. Biological Invasions 9, 53–64.
| Crossref | GoogleScholarGoogle Scholar |

Willis, T. J. , and Babcock, R. C. (2000). A baited underwater video system for the determination of relative density of carnivorous reef fish. Marine and Freshwater Research 51, 755–763.
| Crossref | GoogleScholarGoogle Scholar |

Willis, T. J. , Millar, R. B. , and Babcock, R. C. (2000). Detection of spatial variability in relative density of fishes: comparison of visual census, angling, and baited underwater video. Marine Ecology Progress Series 198, 249–260.
| Crossref | GoogleScholarGoogle Scholar |

Willis, T. J. , Millar, R. B. , and Babcock, R. C. (2003). Protection of exploited fish in temperate regions: high density and biomass of snapper Pagrus auratus (Sparidae) in northern New Zealand marine reserves. Journal of Applied Ecology 40, 214–227.


Willis, T. J. , Badalamenti, F. , and Milazzo, M. (2006). Diel variability in counts of reef fishes and its implications for monitoring. Journal of Experimental Marine Biology and Ecology 331, 108–120.
| Crossref | GoogleScholarGoogle Scholar |

Yamano, H. , and Tamura, M. (2004). Detection limits of coral reef bleaching by satellite remote sensing: Simulation and data analysis. Remote Sensing of Environment 90, 86–103.
| Crossref | GoogleScholarGoogle Scholar |

Yang, D. T. , and Yang, C. Y. (2009). Detection of seagrass distribution changes from 1991 to 2006 in Xincun Bay, Hainan, with satellite remote sensing. Sensors 9, 830–844.
| Crossref | GoogleScholarGoogle Scholar |

Zeller, D. (1998). Spawning aggregations: patterns of movement of the coral trout Plectropomus leopardus (Serranidae) as determined by ultrasonic telemetry. Marine Ecology Progress Series 162, 253–263.
| Crossref | GoogleScholarGoogle Scholar |

Zeller, D. (1999). Ultrasonic telemetry: its application to coral reef fisheries research. Fishery Bulletin 97, 1058–1065.


Zeller, D. , and Russ, G. (1998). Marine reserves: patterns of adult movement of the coral trout (Plectropomus leopardus (Serranidae)). Canadian Journal of Fisheries and Aquatic Sciences 55, 917–924.
| Crossref | GoogleScholarGoogle Scholar |

Zeller, D. , Stoute, S. L. , and Russ, G. R. (2003). Movements of reef fishes across marine reserve boundaries: effects of manipulating a density gradient. Marine Ecology Progress Series 254, 269–280.
| Crossref | GoogleScholarGoogle Scholar |