| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Antarctic Tardigrada: a first step in understanding molecular operational taxonomic units (MOTUs) and biogeography of cryptic meiofauna |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Submitted: 30 April 2012 Accepted: 4 October 2012 Published: 19 December 2012
Abstract
Recent studies have suggested that some resident Antarctic biota are of ancient origin and may have been isolated for millions of years. The phylum Tardigrada, which is part of the Antarctic terrestrial meiofauna, is of particular interest due to an impressive array of biochemical abilities to withstand harsh environmental conditions. Tardigrades are one of the few widespread Antarctic terrestrial animals that have the potential to be used as a model for evolution and biogeography on the Antarctic continent. We isolated 126 individual tardigrades from four geographically isolated soil samples from two remote nunataks in the Sør Rondane Mountains, Dronning Maud Land, Antarctica. We examined genetic variation among individuals utilising three gene regions: cytochrome c oxidase subunit I gene (COI), 18S rDNA (18S), and the wingless (Wg) gene. Comparison of sequences from worldwide and Antarctic tardigrades indicated long-term survival and isolation over glacially dominated periods in ice-free habitats in the Sør Rondane Mountains.
| Introduction | |
Antarctica moved towards the southern polar region 100–65 million years ago, when it had a southern temperate or tropical climate (Francis 1986; Clarke and Crame 1989; Francis and Poole 2002). The opening of the Drake Passage and the Tasman Gateway between 45 and 30 million years ago separated Antarctica from other land masses (Lawver and Gahagan 2003; Livermore et al. 2007), which initiated the Antarctic circumpolar current that thermally isolated the continent from the rest of the world (Pfuhl and McCave 2005; Scher and Martin 2006). The fossil record suggests that the glaciation of Antarctica began at this time (Ashworth and Thompson 2003; Ashworth and Cantrill 2004) and the last relics of cool temperate tundra communities went extinct around 14–12 million years ago (Ashworth and Cantrill 2004; Stevens et al. 2006). Since then the extent of Antarctic ice sheets has fluctuated (Whitehead et al. 2006) with only around 0.32% of land being ice-free at present (Convey et al. 2009).
The original theory that all terrestrial biota recolonised the continent after the last glacial maximum has recently been refuted (e.g. Stevens and Hogg 2006; Convey and Stevens 2007; Convey et al. 2009; Hills et al. 2010). Understanding the Antarctic ice sheet configuration at the last glacial maximum (~17 000 years ago) has evolved over the last decade (Bentley et al. 2009; Bentley 2010). However, based on biological data, some doubt about the accuracy of ice sheet models has been raised (Convey and Stevens 2007; Convey et al. 2009; Storey et al. 2010; Magalhães et al. 2012). Antarctic terrestrial biota are often characterised by high endemism (Chown and Convey 2007) and it has been hypothesised that long-term glacial habitat fragmentation and the in situ isolation of biota was a likely cause (Stevens and Hogg 2003, 2006). In comparison, the sub-Antarctic islands show a mixed evolutionary history, combining biota isolated through glacial maxima and interglacial recent recolonisation (Stevens et al. 2006; McGaughran et al. 2010, 2011; Mortimer et al. 2011), though range expansion appears limited (Stevens and Hogg 2002; Nkem et al. 2006; Adams et al. 2006, 2007). Collectively, these biological studies suggest that much of the Antarctic biota is of ancient origin (Stevens et al. 2006; Convey and Stevens 2007). Such biological signals also support a clear division, the Gressitt line, between two main biogeographic zones comprising Antarctic Peninsula and continental Antarctica (Chown and Convey 2007; see Fig. 1). Studies show that these two zones share no nematode (Andrassy 1998), mite (Pugh 1993), or springtail (McGaughran et al. 2011) species, which is indicative of ancient and different evolutionary origins. However, the Gressitt line separation is less apparent for tardigrade morphospecies (Convey and McInnes 2005), although this has not been examined using molecular markers.
Limno-terrestrial Tardigrada are of cosmopolitan distribution (Nelson 2002), and an ancient phylum that show pronounced Laurasian/Gondwana separation at both generic and familial levels in the extant fauna (McInnes and Pugh 1998, 2007; Pugh and McInnes 1998). Tardigrades are found in almost all environments, from ocean sediments to the tops of Antarctic nunataks. They are small, ranging from ~50 μm to 1200 μm in body length (Nelson 2002). The subtle morphological variations in the buccal apparatus, the insertion of the stylet muscles, and the claw morphology are important taxonomic characters (Pilato and Binda 2010; Marley et al. 2011). Due to their small size and conserved morphology, tardigrade identification at generic and species level is particularly challenging. Cryptobiosis allows tardigrades to endure abiotic stresses such as freezing, drought, ionising radiation and osmotic stress (Wright et al. 1992; Wright 2001). These physiological capabilities make them ideally adapted to survive the harsh arid Antarctic conditions (Sømme and Meier 1995).
Despite being small, lightweight and cryptobiotically adapted, the capability of tardigrades to disperse over long distances has been questioned (McInnes and Pugh 1998; Pilato and Binda 2001). Tardigrade distribution patterns cannot be accounted for in terms of anemochoric dispersal, and the occurrence of most recognised tardigrade species (over 1157) reveal distinct biogeographic affinities (McInnes and Pugh 1998, 2007; Pilato and Binda 2001). Sixty-four tardigrade species have been identified from Antarctica, of which 37 (58%) are endemic (McInnes and Pugh 2007), which is the highest proportion of endemic tardigrade species for any biogeographic region (McInnes and Pugh 1998; McInnes and Pugh 2007). This suggests long-term isolation (at least a pre-Pleistocene origin) on maritime and continental Antarctica.
Here we examined genetic variation among individual tardigrades from Sør Rondane Mountains in Dronning Maud Land (Antarctica) using three genes, 18S rDNA (18S), the nuclear wingless (Wg), and cytochrome c oxidase subunit I (COI), and compare these to individuals from other Antarctic and worldwide locations. In doing so, we ask two questions: (1) Can we identify the tardigrades of the Sør Rondane mountains by utilising vouchered (morphologically identified) sequences; and (2) Are the Sør Rondane Mountains tardigrades endemic, part of an Antarctic fauna, or part of a worldwide cosmopolitan fauna.
| Materials and methods | |
|
Sampling sites and isolation of meiofaunal individuals |
The Sør Rondane Mountains comprise several nunataks with elevations from 1200 m to 1400 m above sea level. We sampled two main nunataks, Tanngarden and Brattnipane (Fig. 1 inset) during 1–13 February 2009. At each site soil samples were obtained from north-facing sites using a stainless steel trowel which was cleaned with snow and ethanol after each use to avoid cross contamination. Samples were double-bagged in Ziploc® bags and frozen (-80°C).
Soil samples were thawed under tepid water, still sealed in Ziploc® bags to avoid contamination. A sugar centrifugation method adapted from Freckman and Virginia (1993) was used to extract animals from 50–100 cm3 of soil; all equipment was cleaned with distilled water between each sample. Individual tardigrades were sorted using a stereo-microscope and each individual was placed in a separate 1.5-mL Eppendorf tube with 10 μL of distilled water using an Irwin loop or glass capillary. The Sør Rondane Mountains individuals were not morphologically identified; our aim was to assess whether it was possible to use a molecular approach to identify these animals (MOTUs).
|
DNA extraction, amplification and sequencing |
We followed Sands et al. (2008a) for DNA extraction protocols for individual specimens. We used PCR (Saiki et al. 1988) to amplify three gene regions. Analysis of rDNA (18S) was chosen due to its suitability and prevalent use in tardigrade systematics providing suitable comparison data (e.g. Sands et al. 2008a , 2008b ). The wingless gene (Wg) was employed as this is a single-copy nuclear gene with presumed Mendelian inheritance and was demonstrated as a potentially useful population genetic marker in an earlier study investigating tardigrades (Sands et al. 2008a ), and identified phylogeographic structure in springtails (Garrick et al. 2007). The cytochrome c oxidase subunit I gene (COI) was employed to detect fine-scale diversity (e.g. species and population level) due to the expected higher mutation rate (Yang 1998).
Amplification was conducted following Sands et al. (2008a) while taking precautions against contamination, as suggested by Niederhauser et al. (1994). PCR of tardigrade individuals and control reactions were visualised with agarose gel electrophoresis. All reaction products were purified with SAPEXO (USB Corp., Cleveland, OH) and sequenced using the forward and reverse primers of Sands et al. (2008a ) employing BigDye Terminator chemistry (Applied Biosystems, Foster City, CA). Sequencing was performed on a capillary ABI3730 genetic analyser (Applied Biosystems) at Brigham Young University.
Sequences were trimmed, assembled and sorted into contigs using Geneious v5.1.6 (Drummond et al. 2012). Sequence reads that could not be successfully merged into contigs were individually compared with the NCBI nucleotide collection using blastn in BLAST 2.2.21 (Altschul et al.1990) and only those of tardigrade origin were kept. Only unique sequences were used for phylogenetic analysis; identical sequences were removed from the alignments before analysis.
|
Comparison sequences |
Additional sequences were included from vouchered (morphologically identified) tardigrade individuals collected from continental, maritime and sub-Antarctica, plus individuals from France, UK and Greenland (C. Sands and S. J. McInnes, unpubl. data). These individuals had been identified to species or the closest species group (see Sands et al. 2008a ). Additionally, relevant tardigrade sequences were obtained from GenBank for the three gene regions. These sequences combined provided the most complete dataset possible for comparing the Sør Rondane Mountains MOTUs with worldwide, Antarctic and sub-Antarctic taxa (Fig. 1). The GenBank accession number, species (where available) and origin of each sequence is used to identify individuals in all analyses. Superfamily, order, and class followed Sands et al. (2008b) and Marley et al. (2011).
For the 18S sequences, we combined 65 eutardigrades from Antarctic, sub-Antarctic and worldwide locations (see Fig. 1) with two (of 78) representative sequences from the Sør Rondane Mountains (all accessions available from GenBank). The Wg dataset included 15 eutardigrade sequences from GenBank with 22 unique Sør Rondane Mountains sequences and with representatives from Antarctic and sub-Antarctic locations. Both the 18S and Wg analyses included Milnesium sp. (Apochela: Milnesiidae) as an outgroup. In order to minimise the effects of saturation (Yang 1998) the COI data were restricted to separate superfamilies (Macrobiotoidea and Hypsibioidea). In the Macrobiotioidea analyses we included 33 macrobiotid GenBank accessions with the 40 unique sequences from the Sør Rondane Mountains, using Dactylobiotus sp. (Murrayidae, Macrobiotoidea) as the outgroup. In the Hypsibioidea analyses, a single sequence of Acutuncus antarcticus was combined with five unidentified unique sequences from Chapman Ridge, Bunger Hills and the McMurdo ice shelf, and eight unique sequences from the Sør Rondane Mountains, with Hypsibius sp. from King George Island (South Shetland Islands, maritime Antarctica) as an outgroup.
|
Multiple sequence alignments |
Nucleotide alignments were performed using MAFFT (Katoh et al. 2002, 2005; Katoh and Toh 2008). The 18S alignment consisted of 1483 nucleotides (after removal of all sites where homology could not be confirmed) with 67 unique sequences. The Wg alignment was converted to amino acid translations (due to saturation) and sequences missing more than 5% of information of the entire length were excluded. The final Wg alignment consisted of a total of 22 unique sequences by 94 amino acids (282 nucleotides). The COI alignments contained 74 unique sequences with 560 nucleotides (Macrobiotioidea) and 15 unique sequences with 510 nucleotides (Hypsibioidea). All COI sequences were checked for stop codons (through amino acid translation). Sequences missing more than 10% of information for the Macrobiotioidea-alignment and more than 5% of information for the Hypsibioidea-alignment were excluded.
|
Phylogenetic analyses |
Testing of substitution models was conducted using jModelTest 0.1.1 (Posada 2008) and with Protest3 (Darriba et al. 2011) in case of the Wg alignment. Employment of ML approaches seemed appropriate due to the considerable variation in sequence length and overlap for the 18S dataset. RAxML 7.2.6 (Stamatakis 2006) was used for inference of phylogenetic trees, using the rapid hill-climbing mechanism, while applying a GTR Model (Tavaré 1986), Γ modelling of rate heterogeneity (Yang 1993) and an ML estimate of the α Parameter. P-Invar (Yang 1993) was not estimated alongside Γ (Gu et al. 1995). In case of Wg the JTT Model (Jones et al. 1992) was applied. Trees for 18S were calculated with 2000 ML inferences, using 2000 MP starting trees. Confidence values were estimated with 2000 non-parametric bootstrap replicates. The ML analyses for COI were calculated with the same parameters, but with 1000 ML inferences and 1000 MP starting and 1000 non-parametric bootstrap replicates. The ML analyses for Wg were calculated using the mentioned parameters, but 2000 ML inferences, 2000 MP starting trees and 2000 non-parametric bootstraps were calculated. Bayesian inference (Ronquist and Huelsenbeck 2003) was employed to compare to the results of the ML analyses. The 18S and COI analyses was calculated under a GTR model, Γ rate variation and four Γ categories, four MCMC chains, a chain length of 20 000 000 generations, a chain temperature of 0.2, subsampling frequency of 4000 generations and burn-in of 500 000 generations. The analysis for the Wg phylogeny was calculated with a fixed JTT rate matrix, using a chain length of 5 000 000 generations, Γ rate variation, subsampling frequency of 1000 and burn-in length of 500 000 generations. Trees were visualised using Dendroscope 3.2.2 (Huson et al. 2007).
The Sør Rondane Mountains COI data were used for analysis using statistical parsimony as implemented in the software TCS (Clement et al. 2000). To not impede the results of the analysis due to missing data (Joly et al. 2007), the first 26 as well the last nucleotide were removed from the Macrobiotioidea-alignment, resulting in a complete alignment of 35 sequences and 605 nucleotides. For the same reason, 18 nucleotides were removed from the Hypsibioidea-alignment resulting in a complete alignment of 7 sequences and 493 nucleotides. Although we left gaps treated as missing data (default), there were no gaps present in the alignment, and a 95% connection limit was chosen, which has been suggested as a threshold to detect separation of networks corresponding to Linnean species (Hart and Sunday 2007). Sequence divergence values were calculated with the software MEGA5 (Tamura et al. 2011). Values were obtained using the Kimura 2-parameter (Kimura 1980) and uncorrected pairwise distances using all 3 codon positions.
| Results | |
|
Fauna of Sør Rondane Mountains |
A total of 126 tardigrade individuals were isolated from four of seven soil samples collected from the two nunataks in the Sør Rondane Mountains (Fig. 1, inset – tardigrades were found in Tanngarden in samples cdh38, cdh39, cdh40 and in Brattnipane sample cdh63). Although frozen (at -80°C) for around two years, a high proportion of animals from all soil samples were moving (alive) when sampled. Overall biodiversity reflected the results of previous studies from separate mountain ranges in the Dronning Maud Land region (Sohlenius et al. 1995, 1996, 2004). There were, however, some notable abundance differences between sampling sites with samples from Tanngarden dominated by bdelloid rotifers and Brattnipane dominated by nematodes, while mites and springtails were rare across all sites.
|
Identity of MOTUs |
To identify the tardigrade fauna from the Sør Rondane Mountains we compared amplified fragments of 18S, COI and wingless gene (Wg). These gene regions have been used previously in other studies that include vouchered specimens (e.g. Sands et al. 2008a , 2008b ). Using these gene regions, we demonstrate that there are two taxonomically distinct tardigrades, or MOTUs, in the Sør Rondane Mountains. There was little intrataxon diversity in the 18S sequences and so a single representative was used for each unknown taxon in the phylogeny (Fig. 2). These were compared with a broad taxonomic range of tardigrades available either as vouchered specimens (C. Sands and S. J. McInnes, unpubl. data) or downloaded from GenBank. Both Maximum Likelihood and Bayesian analyses were conducted on each phylogeny to assure that the results were due to relationships uncovered by the data and not procedural bias. Nodes corroborated by both analyses are supported by bootstrap values and posterior probabilities (Bayesian analyses included in Supplementary Figs 1–4). In the 18S phylogeny (Fig. 2) it is clear that one MOTU belongs to the Macrobiotoidea, perhaps belonging to the genus Macrobiotus. Given the limits of our sampling and the data available for identified, unidentified and misidentified tardigrades, both the wingless (Fig. 3) and COI (Fig. 4) comparisons suggest similar relationships. The second MOTU in the 18S (Fig. 2) belongs to the Hypsibioidea and appears similar to the Antarctic endemic Acutuncus antarcticus, and again both the wingless (Fig. 3) and COI (Fig. 5) comparisons suggest similar relationships.
|
Fig. 4.
Phylogenetic analysis for the Macrobiotioidea-alignment of COI sequences, using a GTR+Γ model, with 1000 independent Maximum Likelihood tree searches using 1000 distinct Maximum Parsimony starting trees. Confidence values are drawn from 1000 pseudoreplicates using the non-parametric Bootstrap. Support values below 50 are not shown. All accesions starting with ‘JX’ are derived from this study. Taxa in bold indicate the closest sequence match to the Sør Rondane Mountains sequences. Letters correspond to groups labelled in Table 1 (mean sequence divergence) and discussed in the text.
|
|
|
Fig. 5.
Phylogenetic analysis for the Hypsibioidea-related alignment of COI sequences, using a GTR+Γ model, with 1000 independent Maximum Likelihood tree searches using 1000 distinct Maximum Parsimony starting trees. Confidence values are drawn from 1000 pseudoreplicates using the non-parametric Bootstrap. Support values below 50 are not shown. All accessions starting with ‘JX’ are derived from this study. Taxa in bold indicate the closest sequence match to the Sør Rondane Mountains sequences. Letters correspond to groups labelled in Table 2 (mean sequence divergence) and discussed in the text.
|
|
|
Antarctic-specific fauna |
The two Sør Rondane Mountains MOTUs are not an exact match for any vouchered sequence for any of the genes examined but in each case they are closely associated with either Antarctic-specific species, such as A. antarcticus, or specimens that were collected from the Antarctic or sub-Antarctic (Fig. 2). The macrobiotid MOTU falls into a clade containing several sequences attributed to the genus Macrobiotus (Fig. 2), two identified as M. furciger and the others unidentified but noted as ‘furciger-species group’ (C. Sands and S. J. McInnes, unpubl. data). Again, all individuals in the clades are of Antarctic or sub-Antarctic origin (Fig. 2). The same associations for both MOTUs are supported in the analyses of the two other genes (Figs 3, 4, 5), although taxon sampling is limited in the wingless analysis.
|
COI sequence divergence |
The Macrobiotoidea alignment of COI shows that the Sør Rondane Mountains MOTUs from Tanngarden and Brattnipane (Clade A: Fig. 4) are grouped with several other Macrobiotus spp. of Antarctic and sub-Antarctic origin (Clades B, C, D, E: Fig. 4). The mean sequence divergence between the Sør Rondane Mountains MOTUs (Clade A) and the Macrobiotus sp. from South Georgia (Clade B) is 20.3% (see Table 1 and Fig. 4). The minimum mean sequence divergence (see Table 1) observed among all sequences between neighbouring clades with morphologically identified sequences (Fig. 4) was 19.7% (Clades V–P). Numerous other clades (that include morphologically identified and unidentified sequences) reveal mean sequence divergences (see Table 1 and Fig. 4) that are above 20%.
|
Table 1.
Estimates of mean sequence divergence between the COI haplotypes in the Macrobiotoidea-related alignment Analyses were conducted in MEGA5, using the Kimura 2-parameter model (below diagonal) and uncorrected P-distance (above diagonal). The analysis involved 74 nucleotide sequences. All three codon positions were included. There were 511 positions in the final dataset. Letters correspond to groups labelled in Fig. 3 and discussed in the text |
|
The Hypsibioidea COI reveals that the Tanngarden MOTUs are subdivided between individuals from cdh38 (Clade A) and cdh40 (Clade B) (Fig. 5) with mean sequence divergence of 0.6% (Table 2). These two Tanngarden clades (A, B) are, however, quite divergent (23.1–24.1%: Table 2) from Clade D comprising A. antarcticus and several closely related unknown sequences (Clade C) from a wide geographic range (from Shackleton Range, McMurdo Sound, Bunger Hills and Chapman Ridge) (see Figs 1 and 5). The mean sequence divergence between both main groups (Tanngarden and other Antarctic sequences) to the outgroup is 29.05% and 31.3%, respectively.
|
Table 2.
Estimates of mean sequence divergence between the COI haplotypes in the Hypsibioidea-related alignment Analyses were conducted in MEGA5, using the Kimura 2-parameter model (below diagonal) and uncorrected P-distance (above diagonal). The analysis involved 15 nucleotide sequences. All three codon positions were included. There were 482 positions in the final dataset. Letters correspond to groups labelled in Fig. 4 and discussed in the text |
|
|
Population substructure |
Population structure was identified in both MOTUs (see Figs 4, 5). The putative ‘Macrobiotus’ MOTU is clearly different from other species sampled from locations around Antarctica. Interestingly, it appears to show substructure in the COI gene even within the limited sampling region, with all haplotypes from the Brattnipane Mountain chain being more closely related to each other than to any haplotype from Tanngarden Mountain chain (Fig. 6). This is despite considerable haplotype diversity. Although the putative ‘Acutuncus’ MOTU associates closely with A. antarcticus (Figs 2, 3), it is considerably different from other A. antarcticus specimens, which is particularly noticeable when comparing COI data for the Sør Rondane Mountains fauna with vouchered specimens (Sands et al. 2008a , 2008b ; C. Sands and S. J. McInnes, unpubl. data) and other A. antarcticus ‘like’ sequences from East Antarctica (Fig. 5).
| Discussion | |
In this study we utilised three gene regions to investigate tardigrades collected at two nunataks in the Sør Rondane mountains, Dronning Maud Land, Antarctica. The aims were: (1) to identify the tardigrades of the Sør Rondane mountains by utilising vouchered (morphologically identified) sequences; and (2) to determine whether the Sør Rondane Mountains tardigrades are endemic, part of an Antarctic fauna, or part of a worldwide cosmopolitan fauna.
|
The Sør Rondane Mountains - macrobiotid MOTUs |
The results from our study showed that one clade of the Sør Rondane Mountains MOTUs falls within the Macrobiotidae family (Fig. 2). The genus Macrobiotus is globally abundant (McInnes and Pugh 1998) and common in Antarctica (Davis 1981; Ottesen and Meier 1990; Convey and McInnes 2005). Many of the macrobiotids are described as ‘species groups’, which are defined by the type species, e.g. Macrobiotus hufelandi species group. The Sør Rondane Mountains MOTUs were clearly related to Macrobiotus species, and in our worldwide dataset closest to other taxa described from the Antarctic (Fig. 2). The deep divergences in Wg and COI analyses (Figs 3, 4; Table 1) between the Sør Rondane Mountains MOTUs and the other macrobiotid taxa from Antarctic and sub-Antarctic localities implies that species-level separation and percentage sequence divergence for COI was greater than 20% (Table 1). This is comparable to that observed among other morphologically distinct species in our study. Cesari et al. (2009) found similar levels of mean sequence divergence (P-distance) among morphologically identified species (16% between M. macrocalix and M. terminalis and 24.8% between M. macrocalix and P. richtersi).
Our samples appear closely related to, but genetically separate from, the Macrobiotus furciger species group. Within Dronning Maud Land Macrobiotus species have been reported from other mountain ranges including Mühlig-Hofmannfjella (Sømme and Meier 1995), Heime-Frontfjella, Vestfjella and Schirmacher Oasis (Sohlenius et al. 1996, 2004; Sohlenius and Boström 2005). Initially (tentatively) these studies identified species as Macrobiotus furciger but have since been corrected to Macrobiotus blocki and Macrobiotus krynauwi (Sohlenius et al. 2004; Sohlenius and Boström 2005, 2006) belonging to the Macrobiotus hufelandi and Macrobiotus harmsworthi species groups, respectively. Although M. blocki and M. krynauwi have not been included in molecular studies, we can say that the Sør Rondane Mountains MOTUs do not belong to either the Macrobiotus hufelandi (Fig. 2) or Macrobiotus harmsworthi species (Fig. 4) groups as example representatives of these groups do not cluster within the Macrobiotus furciger species group (Figs 2, 4). Our samples do group within the Macrobiotus furciger species group but further morphological work is required to identify these to species. It is, however, beyond the scope of the present paper to provide further taxonomic treatment of the Sør Rondane Mountains MOTUs, which will be the subject of a separate morphological and molecular analysis to determine the new species.
|
The Sør Rondane Mountains – hypsibid MOTUs |
The individuals of the second Sør Rondane Mountains MOTU, falling within the superfamily Hypsibioidea, were all closely related to the species Acutuncus antarcticus (see Figs 2, 3, 5), with 18S and wingless analyses (Figs 2, 3) clustered in a close relationship with samples from Antarctic and sub-Antarctic localities (Fig. 2). Acutuncus antarcticus has been widely reported from East Antarctica, West Antarctica (Antarctic Peninsula and islands), and sub-Antarctic islands (South Georgia, Macquarie and Heard Islands) (McInnes 1994; Convey and McInnes 2005). In Dronning Maud Land, Sohlenius et al. (1996, 2004) reported Hypsibius antarcticus (now A. antarcticus) from Vestfjella and Schirmacher Oasis. Fig. 5 shows two divergent lineages, one consisting of the Sør Rondane Mountains MOTUs, and the second from the combined east Antarctic (McMurdo Sound, Chapman Ridge) and vouchered Shackleton Range specimens. The COI (Fig. 5) sequence divergence of ~23% (Table 2) indicated that the Sør Rondane Mountains individuals have been isolated (although found only in Tanngarden) for a considerable period (Fig. 4, Table 2).
|
The Antarctic tardigrade fauna |
The geographical restriction of many limno-terrestrial tardigrades had been observed by Pilato and Binda (2001), who noted that adaptations to microenvironmental niches affect the successful movement of passively dispersed propagules. As mentioned earlier, the harsh environmental conditions of the Antarctic realms require special adaptations (Convey et al. 2008, 2009). Both McInnes and Pugh (1998) and Pilato and Binda (2001) concluded that the present distribution of tardigrade species might represent ancient widespread tardigrade species that gave rise to localised speciation after the continental land masses separated. Cromer et al. (2008) and Gibson et al. (2007) are some of the few studies dealing with palaeobiogeography of tardigrades. Tardigrade remains in temperate environments may not preserve well due to bacterial and enzymatic breakdown; however, polar regions hold subfossil records of these animals and Antarctica is one of the few places with a comparatively rich record (Cromer et al. 2008). These studies reported subfossil evidence, in particular empty eggs, of Macrobiotus furciger, Macrobiotus blocki and Acutuncus antarcticus, with ages of up to 4000, 12 500 and 42 000 years, respectively. The latter age predates the last glacial maximum in Antarctica.
The tardigrade MOTUs from the Sør Rondane Mountains appear to have been isolated in continental Antarctica and have developed levels of sequence divergence in the gene regions we have analysed that are comparable to that observed among other morphologically distinct species (e.g. Cesari et al. 2009). The deep lineage divergence found in both macrobiotid (Fig. 4, Table 1) and hypsibid (Fig. 5, Table 2) Sør Rondane Mountains MOTUs and the network analysis (Fig. 6) supports the theory that tardigrades disperse at more local levels (e.g. nearby nunataks within Brattnipane), but limited dispersal between more distant nunataks (e.g. between Brattnipane and Tangarden). It also provides evidence of long-term survival and isolation of these species within the Antarctic, though the actual refugia or means of recolonisation through glacial maxima is still unknown. Evidence for refugia through the glacial maxima is possible within the Dronning Maud Land region. Analysis of isotope records have shown that the level of ice sheet elevation in Dronning Maud Land varied over the last 10 million years (Altmaier et al. 2010), with the current level of glaciation established at ~100 000 years ago. These results indicate that the ice sheet elevations during the last glacial maximum left exposed rock formations to act as potential refugia in this region.
The careful combination of morphology and molecular techniques to provide an integrative taxonomy has been proposed (Sands et al. 2008a ; Bertolani et al. 2011; Cesari et al. 2011; Stevens et al. 2011). Macrobiotus spp. (and tardigrades in general) have proven to be difficult to morphologically identify to species (Cesari et al. 2009, 2011; Bertolani et al. 2011). The tardigrades from the Sør Rondane Mountains reveal high levels of sequence divergence that indicated the presence of two tardigrade species. We found that MOTUs can be used to identify taxa, provided previous data are available, and can indicate the potential presence of new species and biogeographic associations. Our molecular data indicate that the Sør Rondane Mountains have been isolated for a considerable period. The deep levels of sequence divergence indicated that populations on relatively close nunataks within the same mountain range have been separated and isolated, with limited population exchange over a significant period.
|
Acknowledgements |
|
We thank two anonymous reviewers for helpful comments on the manuscript. We are indebted to Annick Wilmotte for her invitation to join the Belgium BELDIVA (2009) expedition to the Sør Rondane Mountains and for her assistance in the field, and to Jeremy Whiting for DNA sequencing, Peter Fretwell (BAS) for assistance with Fig. 1, and Professor Dr Martin Schlegel (University of Leipzig) for assistance (to PC) throughout the study. All laboratory work was undertaken at the British Antarctic Survey within the Coastal and Terrestrial monitoring workpackage (CJS), in collaboration with Australian Antarctic Division project ASAC 2355 (MIS and BJA) and at Brigham Young University with the support of the United States National Science Foundation ANT-0840979 (BJA). Support was provided by the European Commission for Education and Training for funding from the ERASMUS Program to PC. This paper contributes to the SCAR EBA research programs.
|
References |
|
Adams, B. J., Bardgett, R. D., Ayres, E., Wall, D. H., Aislabie, J., Bamforth, S., Bargagli, R., Cary, C., Cavacini, P., Connell, L., Convey, P., Fell, J. W., Frati, F., Hogg, I. D., Newsham, K. K., O’Donnell, A., Russell, N., Seppelt, R. D., and Stevens, M. I. (2006). Diversity and distribution of Victoria Land biota. Soil Biology & Biochemistry 38, 3003–3018.
| CrossRef | CAS |
Adams, B. J., Wall, D. H., Gozel, U., Dillman, A. R., Chaston, J. M., and Hogg, I. D. (2007). The southernmost worm, Scottnema lindsayae (Nematoda): diversity, dispersal and ecological stability. Polar Biology 30, 809–815.
| CrossRef |
Altmaier, M., Herpers, U., Delisle, G., Merchel, S., and Ott, U. (2010). Glaciation history of Queen Maud Land (Antarctica) reconstructed from in-situ produced cosmogenic 10Be, 26Al and 21Ne. Polar Science 4, 42–61.
| CrossRef |
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403–410.
| CAS |
Andrassy, I. (1998). Nematodes in the sixth continent. Journal of Nematode Systematics and Morphology 1, 107–108.
Ashworth, A. C. C., and Cantrill, D. (2004). Neogene vegetation of the Meyer Desert Formation (Sirius Group) Transantarctic Mountains, Antarctica. Palaeogeography, Palaeoclimatology, Palaeoecology 213, 65–82.
Ashworth, A. C. C., and Thompson, C. F. (2003). A fly in the biogeographic ointment. Nature 423, 135–136.
| CrossRef | CAS |
Bentley, M. J. (2010). The Antarctic palaeo record and its role in improving predictions of future Antarctic Ice Sheet change. Journal of Quaternary Science 25, 5–18.
| CrossRef |
Bentley, M. J., Hodgson, D. A., Smith, J. A., Cofaigh, C. Ó., Domack, E. W., Larter, R. D., Roberts, S. J., Brachfeld, S., Leventer, A., Hjort, C., Hillenbrand, C.-D., and Evans, J. (2009). Mechanisms of Holocene palaeoenvironmental change in the Antarctic Peninsula region. The Holocene 19, 51–69.
| CrossRef |
Bertolani, R., Biserov, V., Rebecchi, L., and Cesari, M. (2011). Taxonomy and biogeography of tardigrades using an integrated approach: new results on species of the Macrobiotus hufelandi group. Invertebrate Zoology 8, 23–36.
Cesari, M., Bertolani, R., Rebecchi, L., and Guidetti, R. (2009). DNA barcoding in Tardigrada: the first case study on Macrobiotus macrocalix Bertolani & Rebecchi 1993 (Eutardigrada, Macrobiotidae). Molecular Ecology Resources 9, 699–706.
| CrossRef | CAS |
Cesari, M., Giovannini, I., Bertolani, R., and Rebecchi, L. (2011). An example of problems associated with DNA barcoding in tardigrades: a novel method for obtaining voucher specimens. Zootaxa 3104, 42–51.
Chown, S. L., and Convey, P. (2007). Spatial and temporal variability across life’s hierarchies in the terrestrial Antarctic. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 362, 2307–2331.
| CrossRef |
Clarke, A., and Crame, J. A. (1989). The origin of the Southern Ocean marine fauna. Geological Society of London, Special Publications 47, 253–268.
| CrossRef |
Clement, M., Posada, D., and Crandall, K. A. (2000). TCS: a computer program to estimate gene genealogies. Molecular Ecology 9, 1657–1659.
| CrossRef | CAS |
Convey, P., and McInnes, S. J. (2005). Exceptional tardigrade-dominated ecosystems in Ellsworth Land, Antarctica. Ecology 86, 519–527.
| CrossRef |
Convey, P., and Stevens, M. I. (2007). Antarctic biodiversity. Science 317, 1877–1878.
| CrossRef | CAS |
Convey, P., Gibson, J. E., Hillenbrand, C. D., Hodgson, D. A., Pugh, P. J. A., Smellie, J. L., and Stevens, M. I. (2008). Antarctic terrestrial life – challenging the history of the frozen continent? Biological Reviews of the Cambridge Philosophical Society 83, 103–117.
| CrossRef |
Convey, P., Stevens, M. I., Dominic, A. H., Smellie, J. L., Hillenbrand, C. D., Barnes, D. K. A., Clarke, A., Pugh, P. J. A., Linse, K., and Cary, S. C. (2009). Exploring biological constraints on the glacial history of Antarctica. Quaternary Science Reviews 28, 3035–3048.
| CrossRef |
Cromer, L., Gibson, J. A. E., McInnes, S. J., and Agius, J. T. (2008). Tardigrade remains from lake sediments. Journal of Paleolimnology 39, 143–150.
| CrossRef |
Darriba, D., Taboada, G. L., Doallo, R., and Posada, D. (2011). ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics (Oxford, England) 27, 1164–1165.
| CrossRef | CAS |
Davis, R. C. (1981). Structure and function of two Antarctic terrestrial moss communities. Ecological Monographs 51, 125–143.
| CrossRef |
Drummond, A. J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T., and Wilson, A. (2012). Geneious v.5.6.4. Available from http://www.geneious.com.
Francis, J. E. (1986). Growth rings in Cretaceous and Tertiary wood from Antarctica and their palaeoclimatic implications. Palaeontology 29, 665–684.
Francis, J. E., and Poole, I. (2002). Cretaceous and early Tertiary climates of Antarctica: evidence from fossil wood. Palaeogeography, Palaeoclimatology, Palaeoecology 182, 47–64.
| CrossRef |
Freckman, D. W., and Virginia, R. A. (1993). Extraction of nematodes from Dry Valley Antarctic soils. Polar Biology 13, 483–487.
| CrossRef |
Garrick, R. C., Sands, J., Rowell, D. M., Hillis, D. M., and Sunnucks, P. (2007). Catchments catch all: long-term population history of a giant springtail from the southeast Australian highlands—a multigene approach. Molecular Ecology 16, 1865–1882.
| CAS |
Gibson, J. A. E., Cromer, L., Agius, J. T., McInnes, S. J., and Marley, N. J. (2007). Tardigrade eggs and exuviae in Antarctic lake sediments: insights into Holocene dynamics and origins of the fauna. Journal of Limnology 66, 65–71.
| CrossRef |
Gu, X., Fu, Y. X., and Li, W. H. (1995). Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Molecular Biology and Evolution 12, 546–557.
| CAS |
Hart, M. W., and Sunday, J. (2007). Things fall apart: biological species form unconnected parsimony networks. Biology Letters 3, 509–512.
| CrossRef | CAS |
Hills, S. F., Stevens, M. I., and Gemmill, C. E. C. (2010). Molecular support for Pleistocene persistence of the continental Antarctic moss Bryum argenteum. Antarctic Science 22, 721–726.
| CrossRef |
Huson, D. H., Richter, D. C., Rausch, C., Dezulian, T., Franz, M., and Rupp, R. (2007). Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics 8, 460.
| CrossRef |
Joly, S., Stevens, M. I., and Jansen van Vuuren, B. (2007). Haplotype networks can be misleading in the presence of missing data. Systematic Biology 56, 857–862.
| CrossRef |
Jones, D. T., Taylor, W. R., and Thornton, J. M. (1992). A new approach to protein fold recognition. Nature 358, 86–89.
| CrossRef | CAS |
Katoh, K., and Toh, H. (2008). Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9, 286–298.
| CrossRef | CAS |
Katoh, K., Misawa, K., Kuma, K., and Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30, 3059–3066.
| CrossRef | CAS |
Katoh, K., Kuma, K., Toh, H., and Miyata, T. (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33, 511–518.
| CrossRef | CAS |
Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111–120.
| CrossRef | CAS |
Lawver, L. A., and Gahagan, L. M. (2003). Evolution of Cenozoic seaways in the circum-Antarctic region. Palaeogeography, Palaeoclimatology, Palaeoecology 198, 11–37.
| CrossRef |
Livermore, R., Hillenbrand, C.-D., Meredith, M., and Eagles, G. (2007). Drake Passage and Cenozoic climate: an open and shut case? Geochemistry Geophysics Geosystems 8, Q01005.
| CrossRef |
Magalhães, C., Stevens, M. I., Cary, S. C., Ball, B. A., Storey, B. C., Wall, D. H., Türk, R., and Ruprecht, U. (2012). At limits of life: multidisciplinary insights reveal environmental constraints on biotic diversity in continental Antarctica. PLoS ONE 7, e44578.
| CrossRef |
Marley, N. J., McInnes, S. J., and Sands, C. J. (2011). Phylum Tardigrada: a re-evaluation of the Parachela. Zootaxa 64, 51–64.
McGaughran, A., Stevens, M. I., and Holland, B. R. (2010). Biogeography of circum-Antarctic springtails. Molecular Phylogenetics and Evolution 57, 48–58.
| CrossRef |
McGaughran, A., Stevens, M. I., Hogg, I. D., and Carapelli, A. (2011). Extreme glacial legacies: a synthesis of the Antarctic springtail phylogeographic record. Insects 2, 62–82.
| CrossRef |
McInnes, S. J. (1994). Zoogeographic distribution of terrestrial/freshwater tardigrades from current literature. Journal of Natural History 28, 257–352.
| CrossRef |
McInnes, S. J., and Pugh, P. J. A. (1998). Biogeography of limno-terrestrial Tardigrada, with particular reference to the Antarctic fauna. Journal of Biogeography 25, 31–36.
| CrossRef |
McInnes, S. J., and Pugh, P. J. A. (2007). An attempt to revisit the global biogeography of limno-terrestrial Tardigrada. Journal of Limnology 66, 90–96.
| CrossRef |
Mortimer, E., Jansen van Vuuren, B., Lee, J. E., Marshall, D. J., Convey, P., and Chown, S. L. (2011). Mite dispersal among the Southern Ocean islands and Antarctica before the last glacial maximum. Proceedings of The Royal Society of London, Biological sciences 278, 1247–1255.
| CAS |
Nelson, D. R. (2002). Current status of the Tardigrada: evolution and ecology. Integrative and Comparative Biology 42, 652–659.
| CrossRef |
Niederhauser, C., Höfelein, C., Wegmüller, B., Lüthy, J., and Candrian, U. (1994). Reliability of PCR decontamination systems. PCR Methods and Applications 4, 117–123.
| CrossRef | CAS |
Nkem, J. N., Wall, D. H., Virginia, R. A., Barrett, J. E., Broos, E. J., Porazinska, D. L., and Adams, B. J. (2006). Wind dispersal of soil invertebrates in the McMurdo Dry valleys, Antarctica. Polar Biology 29, 346–352.
| CrossRef |
Ottesen, P. S., and Meier, T. (1990). Tardigrada from the Husvik area, South Georgia, sub-Antarctic. Polar Research 8, 291–294.
| CrossRef |
Pfuhl, H., and McCave, I. (2005). Evidence for late Oligocene establishment of the Antarctic Circumpolar Current. Earth and Planetary Science Letters 235, 715–728.
| CrossRef | CAS |
Pilato, G., and Binda, M. G. (2001). Biogeography and limno-terrestrial tardigrades: are they truly incompatible binomials? Zoologischer Anzeiger – A Journal of Comparative Zoology 240, 511–516.
Pilato, G., and Binda, M. G. (2010). Definition of families, subfamilies, genera and subgenera of the Eutardigrada, and keys to their identification. Zootaxa 2404, 1–54.
Posada, D. (2008). jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25, 1253–1256.
| CrossRef | CAS |
Pugh, P. J. A. (1993). A synonymic catalogue of the Acari from Antarctica, the sub-Antarctic Islands and the Southern Ocean. Journal of Natural History 27, 323–421.
| CrossRef |
Pugh, P. J. A., and McInnes, S. J. (1998). The origin of Arctic terrestrial and freshwater tardigrades. Polar Biology 19, 177–182.
| CrossRef |
Ronquist, F., and Huelsenbeck, J. P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19, 1572–1574.
| CrossRef | CAS |
Saiki, R., Gelfand, D., Stoffel, S., Scharf, S., Higuchi, R., Horn, G., Mullis, K., and Erlich, H. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239, 487–491.
| CrossRef | CAS |
Sands, C. J., McInnes, S. J., Marley, N. J., Goodall-Copestake, W. P., Convey, P., and Linse, K. (2008a). Phylum Tardigrada: an ‘individual’ approach. Cladistics 24, 861–871.
| CrossRef |
Sands, C. J., Convey, P., Linse, K., and McInnes, S. J. (2008b). Assessing meiofaunal variation among individuals utilising morphological and molecular approaches: an example using the Tardigrada. BMC Ecology 8, 7.
| CrossRef |
Scher, H. D., and Martin, E. E. (2006). Timing and climatic consequences of the opening of Drake Passage. Science 312, 428–430.
| CrossRef | CAS |
Sohlenius, B., and Boström, S. (2005). The geographic distribution of metazoan microfauna on East Antarctic nunataks. Polar Biology 28, 439–448.
| CrossRef |
Sohlenius, B., and Boström, S. (2006). Patch-dynamics and population structure of nematodes and tardigrades on Antarctic nunataks. European Journal of Soil Biology 42, S321–S325.
| CrossRef |
Sohlenius, B., Boström, S., and Hirschfelder, A. (1995). Nematodes, rotifers and tardigrades from nunataks in Dronning Maud Land, East Antarctica. Polar Biology 15, 51–56.
| CrossRef |
Sohlenius, B., Boström, S., and Hirschfelder, A. (1996). Distribution patterns of microfauna (nematodes, rotifers and tardigrades) on nunataks in Dronning Maud Land, East Antarctica. Polar Biology 16, 191–200.
| CrossRef |
Sohlenius, B., Boström, S., and Jönsson, K. I. (2004). Occurrence of nematodes, tardigrades and rotifers on ice-free areas in East Antarctica. Pedobiologia 48, 395–408.
| CrossRef |
Sømme, L., and Meier, T. (1995). Cold tolerance in Tardigrada from Dronning Maud Land, Antarctica. Polar Biology 15, 221–224.
| CrossRef |
Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood–based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (Oxford, England) 22, 2688–2690.
| CrossRef | CAS |
Stevens, M. I., and Hogg, I. D. (2002). Expanded distributional records of Collembola and Acari in southern Victoria Land, Antarctica. Pedobiologia 46, 485–495.
| CrossRef |
Stevens, M. I., and Hogg, I. D. (2003). Long-term isolation and recent range expansion from glacial refugia revealed for the endemic springtail Gomphiocephalus hodgsoni from Victoria Land, Antarctica. Molecular Ecology 12, 2357–2369.
| CrossRef | CAS |
Stevens, M. I., and Hogg, I. D. (2006). Contrasting levels of mitochondrial DNA variability between mites (Penthalodidae) and springtails (Hypogastruridae) from the Trans-Antarctic Mountains suggest long-term effects of glaciation and life history on substitution rates, and speciation processes. Soil Biology & Biochemistry 38, 3171–3180.
| CrossRef | CAS |
Stevens, M. I., Greenslade, P., Hogg, I. D., and Sunnucks, P. (2006). Southern Hemisphere springtails: could any have survived glaciation of Antarctica? Molecular Biology and Evolution 23, 874–882.
| CrossRef | CAS |
Stevens, M. I., Porco, D., D’Haese, C. A., and Deharveng, L. (2011). Comment on “Taxonomy and the DNA Barcoding Enterprise” by Ebach (2011). Zootaxa 2838, 85–88.
Storey, B. C., Fink, D., Hood, D., Joy, K., Shulmeister, J., Riger-Kusk, M., and Stevens, M. I. (2010). Cosmogenic nuclide exposure age constraints on the glacial history and implications on biogeography of the Lake Wellman area, Darwin Mountains, Antarctica. Antarctic Science 22, 603–618.
| CrossRef |
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731–2739.
| CrossRef | CAS |
Tavaré, S. (1986). Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences 17, 57–86.
Whitehead, J. M. M., Quilty, P. G. G., Mckelvey, B. C. C., and O’Brien, P. E. (2006). A review of the cenozoic stratigraphy and glacial history of the Lambert Graben – Prydz Bay Region, East Antarctica. Antarctic Science 18, 83–99.
| CrossRef |
Wright, J. C. (2001). Cryptobiosis 300 years on from van Leuwenhoek: what have we learned about tardigrades? Zoologischer Anzeiger – A Journal of Comparative Zoology 240, 563–582.
Wright, J. C., Westh, P., and Ramløv, H. (1992). Cryptobiosis in Tardigrada. Biological Reviews of the Cambridge Philosophical Society 67, 1–29.
| CrossRef |
Yang, Z. (1993). Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Molecular Biology and Evolution 10, 1396–1401.
| CAS |
Yang, Z. (1998). On the best evolutionary rate for phylogenetic analysis. Systematic Biology 47, 125–133.
| CrossRef | CAS |





e-Alerts
Connect with us









