Register      Login
Australian Journal of Botany Australian Journal of Botany Society
Southern hemisphere botanical ecosystems

Articles citing this paper

Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

Yuerong Zhang A B E , Xiaojun Nie B E , Xiaoou Jia B , Cunzhen Zhao D , Siddanagouda S. Biradar B , Le Wang B , Xianghong Du C and Song Weining A B C F
+ Author Affiliations
- Author Affiliations

A State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China.

B College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.

C Yangling Branch of China Wheat Improvement Centre, Northwest A&F University, Yangling 712100, Shaanxi, China.

D College of Animal Science, Northwest A&F University, Yangling 712100, Shaanxi, China.

E These authors contributed equally to this work.

F Corresponding author. Email: sweining2002@yahoo.com

Australian Journal of Botany 60(5) 461-470 https://doi.org/10.1071/BT12073
Submitted: 27 March 2012  Accepted: 26 May 2012   Published: 13 August 2012



35 articles found in Crossref database.

Codon Usage Analyses Reveal the Evolutionary Patterns among Plastid Genes of Saxifragales at a Larger-Sampling Scale
Bi De, Han Shiyun, Zhou Jun, Zhao Maojin, Zhang Sijia, Kan Xianzhao
Genes. 2023 14(3). p.694
Codon-based indices for modeling gene expression and transcript evolution
Bahiri-Elitzur Shir, Tuller Tamir
Computational and Structural Biotechnology Journal. 2021 19 p.2646
Synonymous mutation gene design to overexpress ACCase in creeping bentgrass to obtain resistance to ACCase-inhibiting herbicides
Heckart Douglas L., Schwartz Brian M., Raymer Paul L., Parrott Wayne A.
Transgenic Research. 2016 25(4). p.465
Comparative analysis of codon usage patterns in the chloroplast genomes of nine forage legumes
Xiao Mingkun, Hu Xiang, Li Yaqi, Liu Qian, Shen Shaobin, Jiang Tailing, Zhang Linhui, Zhou Yingchun, Li Yuexian, Luo Xin, Bai Lina, Yan Wei
Physiology and Molecular Biology of Plants. 2024 30(2). p.153
Genome-wide analysis of codon usage in sesame (Sesamum indicum L.)
Andargie Mebeaselassie, Congyi Zhu
Heliyon. 2022 8(1). p.e08687
Plastome evolution of Aeonium and Monanthes (Crassulaceae): insights into the variation of plastomic tRNAs, and the patterns of codon usage and aversion
Han Shiyun, Bi De, Yi Ran, Ding Hengwu, Wu Longhua, Kan Xianzhao
Planta. 2022 256(2).
The complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species
Mehmetoğlu Ezgi, Kaymaz Yasin, Ateş Duygu, Kahraman Abdullah, Tanyolaç Muhammed Bahattin
Scientific Reports. 2023 13(1).
Comparative and phylogenetic analysis of the complete chloroplast genomes of Uncaria (Rubiaceae) species
Dai Jiangpeng, Liu Qiaozhen, Xu Xingyuan, Tan Zhijie, Lin Yuexia, Gao Xiaoxia, Zhu Shuang
Frontiers in Plant Science. 2023 14
Comparative Plastomes and Phylogenetic Analysis of Cleistogenes and Closely Related Genera (Poaceae)
Wang Rong, Liu Kuan, Zhang Xue-Jie, Chen Wen-Li, Qu Xiao-Jian, Fan Shou-Jin
Frontiers in Plant Science. 2021 12
The chloroplast genome of Salix floderusii and characterization of chloroplast regulatory elements
Ren Weichao, Jiang Zhehui, Zhang Meiqi, Kong Lingyang, Zhang Houliang, Liu Yunwei, Fu Qifeng, Ma Wei
Frontiers in Plant Science. 2022 13
The complete chloroplast genome of pearl millet (Pennisetum glaucum (L.) R. Br.) and comparative analysis within the family poaceae
Raveendar S., Lee G.A., Lee K.J., Shin M.J., Lee J.R., Lee S.Y., Cho G.T., Ma K.H., Chung J.W.
Cereal Research Communications. 2019 47(1). p.1
Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species
Wang Yingzhe, Jiang Dacheng, Guo Kun, Zhao Lei, Meng Fangfang, Xiao Jinglei, Niu Yuan, Sun Yunlong
BMC Genomic Data. 2023 24(1).
Combined Analysis of the Chloroplast Genome and Transcriptome of the Antarctic Vascular Plant Deschampsia antarctica Desv
Lee Jungeun, Kang Yoonjee, Shin Seung Chul, Park Hyun, Lee Hyoungseok, Semsey Szabolcs
PLoS ONE. 2014 9(3). p.e92501
Comparative chloroplast genome analysis of six millet species along with related Poaceae family members
Sathyamurthy Dilipraj, Mannu Jayakanthan, Natesan Senthil, Nathan Bharathi, Nallusamy Saranya, Narayanan Manikanda Boopathi, Duraisamy Kavithamani
The Nucleus. 2024
Free energy of mRNA positively correlates with GC content in chloroplast transcriptomes of edible legumes
Chakraborty Supriyo, Sophiarani Yengkhom, Uddin Arif
Genomics. 2021 113(4). p.2826
Comparative Analysis of Codon Usage Patterns in Chloroplast Genomes of Cherries
Song Yan-Feng, Yang Qing-Hua, Yi Xian-Gui, Zhu Zhao-Qing, Wang Xian-Rong, Li Meng
Forests. 2022 13(11). p.1891
Chloroplast gene expression level is negatively correlated with evolutionary rates and selective pressure while positively with codon usage bias in Ophioglossum vulgatum L
Hao Jing, Liang Yingyi, Ping Jingyao, Li Jinye, Shi Wanxin, Su Yingjuan, Wang Ting
BMC Plant Biology. 2022 22(1).
Analysis of Codon Usage Patterns of Six Sequenced Brachypodium distachyon Lines Reveals a Declining CG Skew of the CDSs from the 5′-ends to the 3′-ends
Wang Jianyong, Lin Yujing, Xi Mengli
Genes. 2021 12(10). p.1467
Deciphering codon usage patterns and evolutionary forces in chloroplast genes of Camellia sinensis var. assamica and Camellia sinensis var. sinensis in comparison to Camellia pubicosta
Yengkhom Sophiarani, Uddin Arif, Chakraborty Supriyo
Journal of Integrative Agriculture. 2019 18(12). p.2771
Dynamic evolution of the plastome in the Elm family (Ulmaceae)
Gao Yongwei, Liu Kangjia, Li Enzhe, Wang Yushuang, Xu Chao, Zhao Liangcheng, Dong Wenpan
Planta. 2023 257(1).
Complete Chloroplast Genome Sequence of Broomcorn Millet (Panicum miliaceum L.) and Comparative Analysis with Other Panicoideae Species
Nie Xiaojun, Zhao Xian, Wang Sue, Zhang Ting, Li Chong, Liu Hui, Tong Wei, Guo Yuan
Agronomy. 2018 8(9). p.159
Comparative analysis of codon usage patterns in chloroplast genomes of six Euphorbiaceae species
Wang Zhanjun, Xu Beibei, Li Bao, Zhou Qingqing, Wang Guiyi, Jiang Xingzhou, Wang Chenchen, Xu Zhongdong
PeerJ. 2020 8 p.e8251
Analysis of codon usage pattern in Lonicera × heckrottii ‘Gold Flame’ based on chloroplast genome
ZHANG Jiaqiang, LIU Huichun, XU Wenting, ZHU Kaiyuan
Notulae Botanicae Horti Agrobotanici Cluj-Napoca. 2022 50(1). p.12535
Analysis of codon usage bias of chloroplast genes in Oryza species
Chakraborty Supriyo, Yengkhom Sophiarani, Uddin Arif
Planta. 2020 252(4).
Chloroplast genome assembly of Handroanthus impetiginosus: comparative analysis and molecular evolution in Bignoniaceae
Sobreiro Mariane B., Vieira Lucas D., Nunes Rhewter, Novaes Evandro, Coissac Eric, Silva-Junior Orzenil B., Grattapaglia Dario, Collevatti Rosane Garcia
Planta. 2020 252(5).
Codon usage by chloroplast gene is bias in Hemiptelea davidii
Liu Huabo, Lu Yizeng, Lan Baoliang, Xu Jichen
Journal of Genetics. 2020 99(1).
Comparative analysis of codon usage patterns in chloroplast genomes of five Miscanthus species and related species
Sheng Jiajing, She Xuan, Liu Xiaoyu, Wang Jia, Hu Zhongli
PeerJ. 2021 9 p.e12173
Analysis of codon usage patterns in 48 Aconitum species
Yang Meihua, Liu Jiahao, Yang Wanqing, Li Zhen, Hai Yonglin, Duan Baozhong, Zhang Haizhu, Yang Xiaoli, Xia Conglong
BMC Genomics. 2023 24(1).
Analysis of codon usage bias of chloroplast genomes in Gynostemma species
Zhang Peipei, Xu Wenbo, Lu Xu, Wang Long
Physiology and Molecular Biology of Plants. 2021 27(12). p.2727
Codon usage pattern and genetic diversity in chloroplast genomes of Panicum species
Li Gun, Zhang Liang, Xue Pei
Gene. 2021 802 p.145866
Comparative and Phylogenetic Analysis of Complete Plastomes among Aristidoideae Species (Poaceae)
Guo Xiu-Xiu, Qu Xiao-Jian, Zhang Xue-Jie, Fan Shou-Jin
Biology. 2022 11(1). p.63
Comparative chloroplast genomics of 34 species in subtribe Swertiinae (Gentianaceae) with implications for its phylogeny
Yang Lucun, Deng Shengxue, Zhu Yongqing, Da Qilin
BMC Plant Biology. 2023 23(1).
Comparative chloroplast genomics and insights into the molecular evolution of Tanaecium (Bignonieae, Bignoniaceae)
Frazão Annelise, Thode Verônica A., Lohmann Lúcia G.
Scientific Reports. 2023 13(1).
Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family
Nie Xiaojun, Deng Pingchuan, Feng Kewei, Liu Peixun, Du Xianghong, You Frank M, Weining Song
Plant Molecular Biology Reporter. 2014 32(4). p.828
Codon usage and codon pair patterns in non-grass monocot genomes
Mazumdar Purabi, Binti Othman RofinaYasmin, Mebus Katharina, Ramakrishnan N, Ann Harikrishna Jennifer
Annals of Botany. 2017 120(6). p.893

Committee on Publication Ethics


Abstract Supplementary MaterialSupplementary Material (798 KB) Export Citation Get Permission