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RESEARCH ARTICLE

Orchard floor management effect on soil free-living nematode communities

Gil Eshel A , Adrian Unc https://orcid.org/0000-0002-7265-9758 B * , Roey Egozi A , Efrat Shakartchy C , Tirza Doniger C and Yosef Steinberger https://orcid.org/0000-0003-4298-1508 C *
+ Author Affiliations
- Author Affiliations

A Soil Erosion Research Station, Ministry of Agriculture & Rural Development, P.O. Box 30, Beit-Dagan 50250, Israel.

B School of Science and the Environment, Memorial University of Newfoundland, Corner Brook A2H 5G4, Canada.

C The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan 529002, Israel.

* Correspondence to: aunc@mun.ca, ysteinberger@gmail.com

Handling Editor: Jonathan Adams

Soil Research 60(3) 310-319 https://doi.org/10.1071/SR21196
Submitted: 14 July 2021  Accepted: 31 August 2021   Published: 10 November 2021

© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing

Abstract

Context: Although both plant cover and mulch are considered for erosion control in arid and semi-arid regions, they have divergent impacts on soil ecology.

Aim: We examined the effects of orchard floor management practices on the density and diversity of soil free-living nematode communities and relevant soil abiotic properties.

Methods: Soils were sampled in winter in a citrus orchard in the Sharon region of Israel from plots that for 6 years had been under (1) annual native species; or (2) Avena sativa and Vicia villosa, planted between tree rows; or (3) woodchip mulching along tree rows. There were two control sites: (4) bare soil between tree rows and (5) bare soil along the tree rows (both common practice).

Key results: Nematode communities and their trophic diversity were significantly impacted by floor management. Significant increases in soil moisture under plant cover, and higher organic matter and water-holding capacity for all covered orchard floors could be related to nematode changes. Shifts in nematode feeding group structure suggest a shift in the type and availability of soil carbon pools.

Conclusions: There was a strong association between orchard floor management and soil free-living nematode communities, indicating a shift in the soil food-web structure and functionality. Bare soil harboured fewer nematodes, but more complex communities dominated by persisters, while seeded plant cover had a greater nematode abundance dominated by coloniser communities, indicating increased availability of resources.

Implications: Results reveal the importance of integrating biological information in performance index determinations for improving soil management decisions, suggesting these relationships as sensitive bio-indicators of soil health.

Keywords: cover crops, functional diversity, mediterranean, mulching, nematodes, orchard, soil degradation, soil ecology.


References

Agassi M, Shainberg I, Morin J (1981) Effect of electrolyte concentration and soil sodicity on infiltration rate and crust formation. Soil Science Society of America Journal 45, 848–851.
Effect of electrolyte concentration and soil sodicity on infiltration rate and crust formation.Crossref | GoogleScholarGoogle Scholar |

Assouline S (2004) Rainfall-induced soil surface sealing: a critical review of observations, conceptual models, and solutions. Vadose Zone Journal 3, 570–591.
Rainfall-induced soil surface sealing: a critical review of observations, conceptual models, and solutions.Crossref | GoogleScholarGoogle Scholar |

Bakonyi G, Nagy P, Kovács-Láng E, Kovács E, Barabás S, Répási V, Seres A (2007) Soil nematode community structure as affected by temperature and moisture in a temperate semiarid shrubland. Applied Soil Ecology 37, 31–40.
Soil nematode community structure as affected by temperature and moisture in a temperate semiarid shrubland.Crossref | GoogleScholarGoogle Scholar |

Baxter C, Rowan JS, McKenzie BM, Neilson R (2013) Understanding soil erosion impacts in temperate agroecosystems: bridging the gap between geomorphology and soil ecology using nematodes as a model organism. Biogeosciences 10, 7133–7145.
Understanding soil erosion impacts in temperate agroecosystems: bridging the gap between geomorphology and soil ecology using nematodes as a model organism.Crossref | GoogleScholarGoogle Scholar |

Bezerra TN, Eisendle U, Hodda M, Holovachov O, Leduc D, Mokievsky V, Peña Santiago R, Sharma J, Smol N, Tchesunov A, Venekey V, Zhao Z, Vanreusel A (2021) Nemys: World Database of Nematodes. Available at http://nemys.ugent.be [Accessed 26 August 2021].
| Crossref |

Blanco-Canqui H, Shaver TM, Lindquist JL, Shapiro CA, Elmore RW, Francis CA, Hergert GW (2015) Cover crops and ecosystem services: Insights from studies in temperate soils. Agronomy Journal 107, 2449–2474.
Cover crops and ecosystem services: Insights from studies in temperate soils.Crossref | GoogleScholarGoogle Scholar |

Bongers T (1990) The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia 83, 14–19.
The maturity index: an ecological measure of environmental disturbance based on nematode species composition.Crossref | GoogleScholarGoogle Scholar | 28313236PubMed |

Bongers T, Bongers M (1998) Functional diversity of nematodes. Applied Soil Ecology 10, 239–251.
Functional diversity of nematodes.Crossref | GoogleScholarGoogle Scholar |

Bongers T, Ferris H (1999) Nematode community structure as a bioindicator in environmental monitoring. Trends in Ecology & Evolution 14, 224–228.
Nematode community structure as a bioindicator in environmental monitoring.Crossref | GoogleScholarGoogle Scholar |

Briar SS, Grewal PS, Somasekhar N, Stinner D, Miller SA (2007) Soil nematode community, organic matter, microbial biomass and nitrogen dynamics in field plots transitioning from conventional to organic management. Applied Soil Ecology 37, 256–266.
Soil nematode community, organic matter, microbial biomass and nitrogen dynamics in field plots transitioning from conventional to organic management.Crossref | GoogleScholarGoogle Scholar |

Cairns EJ (1960) Methods in nematology. In ‘Nematology, fundamentals and recent advances with emphasis on plant parasitic and soil forms’. (eds JN Sasser, WR Jenkins) pp. 33–84. (University of North Carolina Press: Chapel Hill, NC)

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, Mcdonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7, 335–336.
QIIME allows analysis of high-throughput community sequencing data.Crossref | GoogleScholarGoogle Scholar | 20383131PubMed |

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R (2011) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences of the United States of America 108, 4516–4522.
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.Crossref | GoogleScholarGoogle Scholar | 20534432PubMed |

Cerdà A, Morera AG, Bodí MB (2009) Soil and water losses from new citrus orchards growing on sloped soils in the western Mediterranean basin. Earth Surface Processes and Landforms 34, 1822–1830.
Soil and water losses from new citrus orchards growing on sloped soils in the western Mediterranean basin.Crossref | GoogleScholarGoogle Scholar |

Dale VH, Beyeler SC (2001) Challenges in the development and use of ecological indicators. Ecological Indicators 1, 3–10.
Challenges in the development and use of ecological indicators.Crossref | GoogleScholarGoogle Scholar |

Dong D, Chen Y-F, Steinberger Y, Cao Z-P (2008) Effects of different soil management practices on soil free-living nematode community structure, Eastern China. Canadian Journal of Soil Science 88, 115–127.
Effects of different soil management practices on soil free-living nematode community structure, Eastern China.Crossref | GoogleScholarGoogle Scholar |

Du X-F, Li Y-B, Han X, Ahmad W, Li Q (2020) Using high-throughput sequencing quantitatively to investigate soil nematode community composition in a steppe-forest ecotone. Applied Soil Ecology 152, 103562
Using high-throughput sequencing quantitatively to investigate soil nematode community composition in a steppe-forest ecotone.Crossref | GoogleScholarGoogle Scholar |

Dunn L, Lang C, Marilleau N, Terrat S, Biju-Duval L, Lelièvre M, Perrin S, Chemidlin Prévost-Bouré N (2021) Soil microbial communities in the face of changing farming practices: a case study in an agricultural landscape in France. PLOS ONE 16, e0252216
Soil microbial communities in the face of changing farming practices: a case study in an agricultural landscape in France.Crossref | GoogleScholarGoogle Scholar | 34138883PubMed |

DuPont ST, Ferris H, Van Horn M (2009) Effects of cover crop quality and quantity on nematode-based soil food webs and nutrient cycling. Applied Soil Ecology 41, 157–167.
Effects of cover crop quality and quantity on nematode-based soil food webs and nutrient cycling.Crossref | GoogleScholarGoogle Scholar |

Eshel G, Egozi R, Goldwasser Y, Kashti Y, Fine P, Hayut E, Kazukro H, Rubin B, Dar Z, Keisar O, DiSegni DM (2015) Benefits of growing potatoes under cover crops in a Mediterranean climate. Agriculture, Ecosystems & Environment 211, 1–9.
Benefits of growing potatoes under cover crops in a Mediterranean climate.Crossref | GoogleScholarGoogle Scholar |

Eshel G, Levy GJ, Singer MJ (2004) Spectral reflectance properties of crusted soils under solar illumination. Soil Science Society of America Journal 68, 1982–1991.
Spectral reflectance properties of crusted soils under solar illumination.Crossref | GoogleScholarGoogle Scholar |

Fernández-Raga M, Palencia C, Keesstra S, Jordán A, Fraile R, Angulo-Martínez M, Cerdà A (2017) Splash erosion: a review with unanswered questions. Earth-Science Reviews 171, 463–477.
Splash erosion: a review with unanswered questions.Crossref | GoogleScholarGoogle Scholar |

Ferris H, Matute MM (2003) Structural and functional succession in the nematode fauna of a soil food web. Applied Soil Ecology 23, 93–110.
Structural and functional succession in the nematode fauna of a soil food web.Crossref | GoogleScholarGoogle Scholar |

Fitoussi N, Pen-Mouratov S, Steinberger Y (2016) Soil free-living nematodes as bio-indicators for assaying the invasive effect of the alien plant Heterotheca subaxillaris in a coastal dune ecosystem. Applied Soil Ecology 102, 1–9.
Soil free-living nematodes as bio-indicators for assaying the invasive effect of the alien plant Heterotheca subaxillaris in a coastal dune ecosystem.Crossref | GoogleScholarGoogle Scholar |

Gebremikael MT, Buchan D, De Neve S (2014) Quantifying the influences of free-living nematodes on soil nitrogen and microbial biomass dynamics in bare and planted microcosms. Soil Biology and Biochemistry 70, 131–141.
Quantifying the influences of free-living nematodes on soil nitrogen and microbial biomass dynamics in bare and planted microcosms.Crossref | GoogleScholarGoogle Scholar |

Gołębiewski M, Tarasek A, Sikora M, Deja-Sikora E, Tretyn A, Niklińska M (2019) Rapid microbial community changes during initial stages of pine litter decomposition. Microbial Ecology 77, 56–75.
Rapid microbial community changes during initial stages of pine litter decomposition.Crossref | GoogleScholarGoogle Scholar | 29850933PubMed |

Goodsell PJ, Underwood AJ, Chapman MG (2009) Evidence necessary for taxa to be reliable indicators of environmental conditions or impacts. Marine Pollution Bulletin 58, 323–331.
Evidence necessary for taxa to be reliable indicators of environmental conditions or impacts.Crossref | GoogleScholarGoogle Scholar | 19058818PubMed |

Heip C, Warwick RM, Carr MR, Herman PMJ, Huys R, Smol N, Van Holsbeke K (1988) Analysis of community attributes of the benthic meiofauna of Frierfjord/Langesundfjord. Marine Ecology Progress Series 46, 171–180.
Analysis of community attributes of the benthic meiofauna of Frierfjord/Langesundfjord.Crossref | GoogleScholarGoogle Scholar |

Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh H-J, Tappu R (2016) MEGAN community edition – interactive exploration and analysis of large-scale microbiome sequencing data. PLOS Computational Biology 12, e1004957
MEGAN community edition – interactive exploration and analysis of large-scale microbiome sequencing data.Crossref | GoogleScholarGoogle Scholar | 27327495PubMed |

Jordán A, Zavala LM, Gil J (2010) Effects of mulching on soil physical properties and runoff under semi-arid conditions in southern Spain. CATENA 81, 77–85.
Effects of mulching on soil physical properties and runoff under semi-arid conditions in southern Spain.Crossref | GoogleScholarGoogle Scholar |

Karr JR (1991) Biological integrity: a long-neglected aspect of water resource management. Ecological Applications 1, 66–84.
Biological integrity: a long-neglected aspect of water resource management.Crossref | GoogleScholarGoogle Scholar | 27755684PubMed |

Lenz R, Eisenbeis G (2000) Short-term effects of different tillage in a sustainable farming system on nematode community structure. Biology and Fertility of Soils 31, 237–244.
Short-term effects of different tillage in a sustainable farming system on nematode community structure.Crossref | GoogleScholarGoogle Scholar |

Li Y, Jiang P, Chang SX, Wu J, Lin L (2010) Organic mulch and fertilization affect soil carbon pools and forms under intensively managed bamboo (Phyllostachys praecox) forests in southeast China. Journal of Soils and Sediments 10, 739–747.
Organic mulch and fertilization affect soil carbon pools and forms under intensively managed bamboo (Phyllostachys praecox) forests in southeast China.Crossref | GoogleScholarGoogle Scholar |

Montanarella L, Pennock DJ, McKenzie N, Badraoui M, Chude V, Baptista I, Mamo T, Yemefack M, Singh Aulakh M, Yagi K, Young Hong S, Vijarnsorn P, Zhang GL, Arrouays D, Black H, Krasilnikov P, Sobocká J, Alegre J, Henriquez CR, De Lourdes Mendonça-Santos M, Taboada M, Espinosa-Victoria D, Alshankiti A, Alavipanah SK, Elsheikh EaEM, Hempel J, Camps Arbestain M, Nachtergaele F, Vargas R (2016) World’s soils are under threat. SOIL 2, 79–82.
World’s soils are under threat.Crossref | GoogleScholarGoogle Scholar |

Neher DA (2001) Role of nematodes in soil health and their use as indicators. Journal of Nematology 33, 161–168.

Neher DA, Campbell CL (1996) Sampling for regional monitoring of nematode communities in agricultural soils. Journal of Nematology 28, 196–208.

Neher DA, Wu J, Barbercheck ME, Anas O (2005) Ecosystem type affects interpretation of soil nematode community measures. Applied Soil Ecology 30, 47–64.
Ecosystem type affects interpretation of soil nematode community measures.Crossref | GoogleScholarGoogle Scholar |

Nisa RU, Tantray AY, Kouser N, Allie KA, Wani SM, Alamri SA, Alyemeni MN, Wijaya L, Shah AA (2021) Influence of ecological and edaphic factors on biodiversity of soil nematodes. Saudi Journal of Biological Sciences 28, 3049–3059.
Influence of ecological and edaphic factors on biodiversity of soil nematodes.Crossref | GoogleScholarGoogle Scholar | 34025181PubMed |

Orgiazzi A, Panagos P (2018) Soil biodiversity and soil erosion: it is time to get married. Global Ecology and Biogeography 27, 1155–1167.
Soil biodiversity and soil erosion: it is time to get married.Crossref | GoogleScholarGoogle Scholar |

Pen-Mouratov S, He X, Steinberger Y (2004) Spatial distribution and trophic diversity of nematode populations under Acacia raddiana along a temperature gradient in the Negev Desert ecosystem. Journal of Arid Environments 56, 339–355.
Spatial distribution and trophic diversity of nematode populations under Acacia raddiana along a temperature gradient in the Negev Desert ecosystem.Crossref | GoogleScholarGoogle Scholar |

Ritz K, Black HIJ, Campbell CD, Harris JA, Wood C (2009) Selecting biological indicators for monitoring soils: a framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators 9, 1212–1221.
Selecting biological indicators for monitoring soils: a framework for balancing scientific and technical opinion to assist policy development.Crossref | GoogleScholarGoogle Scholar |

Sánchez-Moreno S, Smukler S, Ferris H, O’Geen AT, Jackson LE (2008) Nematode diversity, food web condition, and chemical and physical properties in different soil habitats of an organic farm. Biology and Fertility of Soils 44, 727–744.
Nematode diversity, food web condition, and chemical and physical properties in different soil habitats of an organic farm.Crossref | GoogleScholarGoogle Scholar |

Serrano-Ortiz P, Roland M, Sanchez-Moral S, Janssens IA, Domingo F, Goddéris Y, Kowalski AS (2010) Hidden, abiotic CO2 flows and gaseous reservoirs in the terrestrial carbon cycle: review and perspectives. Agricultural and Forest Meteorology 150, 321–329.
Hidden, abiotic CO2 flows and gaseous reservoirs in the terrestrial carbon cycle: review and perspectives.Crossref | GoogleScholarGoogle Scholar |

Shannon CE, Weaver, W (1949) ‘The mathematical theory of communication’. (University of Illinois Press: Urbana, IL, USA)

Simpson EH (1949) Measurement of diversity. Nature 163, 688
Measurement of diversity.Crossref | GoogleScholarGoogle Scholar |

Song D, Tariq A, Pan K, Chen W, Zhang A, Sun X, Ran Y, Zeng F (2020) Effects of straw mulching practices on soil nematode communities under walnut plantation. Scientific Reports 10, 15351
Effects of straw mulching practices on soil nematode communities under walnut plantation.Crossref | GoogleScholarGoogle Scholar | 32948816PubMed |

ter Braak CJF (1995) Non-linear methods for multivariate statistical calibration and their use in paleoecology: a comparison of inverse (k-nearest neighbours, partial least squares and weighted averaging partial least squares) and classical approaches. Chemometrics and Intelligent Laboratory Systems 28, 165–180.
Non-linear methods for multivariate statistical calibration and their use in paleoecology: a comparison of inverse (k-nearest neighbours, partial least squares and weighted averaging partial least squares) and classical approaches.Crossref | GoogleScholarGoogle Scholar |

Topaz T, Egozi R, Eshel G, Chefetz B (2018) Pesticide load dynamics during stormwater flow events in Mediterranean coastal streams: Alexander stream case study. Science of The Total Environment 625, 168–177.
Pesticide load dynamics during stormwater flow events in Mediterranean coastal streams: Alexander stream case study.Crossref | GoogleScholarGoogle Scholar |

Twinn DC (1974) Nematodes. In ‘Biology of plant litter decomposition’. (eds CH Dickinson, GJF Pugh) pp. 421–465. (Academic Press: London, UK)

Wang Y, Liu L, Luo Y, Awasthi MK, Yang J, Duan Y, Li H, Zhao Z (2020) Mulching practices alter the bacterial-fungal community and network in favor of soil quality in a semiarid orchard system. Science of The Total Environment 725, 138527
Mulching practices alter the bacterial-fungal community and network in favor of soil quality in a semiarid orchard system.Crossref | GoogleScholarGoogle Scholar |

Wardle DA, Yeates GW, Watson RN, Nicholson KS (1995a) The detritus food-web and the diversity of soil fauna as indicators of disturbance regimes in agro-ecosystems. Plant and Soil 170, 35–43.
The detritus food-web and the diversity of soil fauna as indicators of disturbance regimes in agro-ecosystems.Crossref | GoogleScholarGoogle Scholar |

Wardle DA, Yeates GW, Watson RN, Nicholson KS (1995b) Development of the decomposer food-web, trophic relationships, and ecosystem properties during a three-year primary succession in sawdust. Oikos 73, 155–166.
Development of the decomposer food-web, trophic relationships, and ecosystem properties during a three-year primary succession in sawdust.Crossref | GoogleScholarGoogle Scholar |

Wasilewska L (1994) The effect of age of meadows on succession and diversity in soil nematode communities. Pedobiologia 38, 1–11.

Yeates GW (2003) Nematodes as soil indicators: functional and biodiversity aspects. Biology and Fertility of Soils 37, 199–210.
Nematodes as soil indicators: functional and biodiversity aspects.Crossref | GoogleScholarGoogle Scholar |

Yeates GW, van der Meulen H (1996) Recolonization of methyl-bromide sterilized soils by plant and soil nematodes over 52 months. Biology and Fertility of Soils 21, 1–6.
Recolonization of methyl-bromide sterilized soils by plant and soil nematodes over 52 months.Crossref | GoogleScholarGoogle Scholar |

Yeates GW, Wardle DA, Watson RN (1993) Relationships between nematodes, soil microbial biomass and weed-management strategies in maize and asparagus cropping systems. Soil Biology and Biochemistry 25, 869–876.
Relationships between nematodes, soil microbial biomass and weed-management strategies in maize and asparagus cropping systems.Crossref | GoogleScholarGoogle Scholar |

Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO (2014) The SILVA and ‘All-species Living Tree Project (LTP)’ taxonomic frameworks. Nucleic Acids Research 42, D643–D648.
The SILVA and ‘All-species Living Tree Project (LTP)’ taxonomic frameworks.Crossref | GoogleScholarGoogle Scholar | 24293649PubMed |

Zhang X, Li Q, Zhu A, Liang W, Zhang J, Steinberger Y (2012) Effects of tillage and residue management on soil nematode communities in North China. Ecological Indicators 13, 75–81.
Effects of tillage and residue management on soil nematode communities in North China.Crossref | GoogleScholarGoogle Scholar |

Zhao J, Neher DA (2014) Soil energy pathways of different ecosystems using nematode trophic group analysis: a meta analysis. Nematology 16, 379–385.
Soil energy pathways of different ecosystems using nematode trophic group analysis: a meta analysis.Crossref | GoogleScholarGoogle Scholar |