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RESEARCH ARTICLE (Open Access)

Actinomycetes from diverse Malaysian habitats and ecosystems

Nurul ‘Izzah Mohd Sarmin A B * , Geok Yuan Annie Tan C * and Noraziah Mohamad Zin D
+ Author Affiliations
- Author Affiliations

A Centre of Preclinical Science Studies, Faculty of Dentistry, Universiti Teknologi MARA, Sungai Buloh Campus, Sungai Buloh, 47000 Selangor, Malaysia.

B Atta-ur-Rahman Institute for Natural Product Discovery (AuRIns), Universiti Teknologi MARA, Selangor Branch, Puncak Alam Campus, 42300 Selangor, Malaysia.

C Institute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603 Kuala Lumpur, Malaysia.

D Centre for Diagnostic, Therapeutic and Investigative Studies, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 50300 Kuala Lumpur, Malaysia.




Dr Nurul ‘Izzah Mohd Sarmin is a Senior Lecturer at Universiti Teknologi MARA (UiTM). She has successfully isolated a novel endophytic actinomycete, Streptomyces kebangsaanensis, from a Malaysian ethnomedicinal plant. Her research studies include anti-biofilm activity of endophytic actinomycetes and medicinal plants against multi-species oral biofilms, particularly on the role of quorum-sensing systems in regulating microbial resistance mechanisms, to reduce antimicrobial resistance. She is currently working on isolating anti-biofilm compounds from Dipterocarpaceous plants and peptides from endophytic bacteria.



Dr Geok Yuan Annie Tan is a Professor in Microbiology & Molecular Genetics at the Institute of Biological Sciences, Faculty of Science, Universiti Malaya. She has been working with actinomycetes since 1998, particularly in the aspects of diversity and taxonomy. She has expanded her research interests to include natural product discovery, bacterial diversity and microbiome studies. Professor Tan is a Life Member and the current Assistant Secretary of the Malaysian Society for Microbiology.



Dr Noraziah Mohamad Zin is a Professor in Medical Microbiology at Universiti Kebangsaan Malaysia. Her research interests include pathogenic bacteria, bacterial metabolites and their applications in addressing antimicrobial resistance. Professor Nora is a Life Member of the Malaysian Society for Microbiology.

Microbiology Australia 46(3) 154-157 https://doi.org/10.1071/MA25043
Submitted: 8 September 2025  Accepted: 11 September 2025  Published: 19 September 2025

© 2025 The Author(s) (or their employer(s)). Published by CSIRO Publishing on behalf of the ASM. This is an open access article distributed under the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC)

Abstract

Malaysia, one of the world’s most biodiverse countries, supports diverse ecosystems that harbour rich microbial communities, including actinomycetes. These Gram-positive, high-GC-content bacteria occur in terrestrial soil, marine sediments and plant tissues, where they contribute to nutrient cycling, plant growth promotion, pathogen suppression and the production of bioactive metabolites. This review covers studies from 2010 to 2024 on the diversity of actinomycetes isolated from Malaysian ecosystems. Several novel actinomycete species were reported from Malaysian environments, predominantly mangrove soils in Peninsular Malaysia, with fewer studies in East Malaysia (Sabah and Sarawak). While Malaysian mangroves and marine sediments have been frequently sampled, rainforest ecosystems remain underexplored despite their exceptional plant diversity. Malaysian actinomycetes exhibit promising pharmaceutical and agricultural applications, including antimicrobial, antioxidant, anticancer and insecticidal activities, as well as plant growth-promoting traits. However, few studies have incorporated genome-based approaches or systematic screening of biosynthetic gene clusters. Expanding biogeographic surveys and integrating high-throughput genomic and metabolomic methods are essential to unlock the full biotechnological potential of Malaysia’s actinomycetes.

Keywords: actinobacteria, microbial diversity, plant-associated bacteria, secondary metabolites, Streptomyces.

Biographies

MA25043_B1.gif

Dr Nurul ‘Izzah Mohd Sarmin is a Senior Lecturer at Universiti Teknologi MARA (UiTM). She has successfully isolated a novel endophytic actinomycete, Streptomyces kebangsaanensis, from a Malaysian ethnomedicinal plant. Her research studies include anti-biofilm activity of endophytic actinomycetes and medicinal plants against multi-species oral biofilms, particularly on the role of quorum-sensing systems in regulating microbial resistance mechanisms, to reduce antimicrobial resistance. She is currently working on isolating anti-biofilm compounds from Dipterocarpaceous plants and peptides from endophytic bacteria.

MA25043_B2.gif

Dr Geok Yuan Annie Tan is a Professor in Microbiology & Molecular Genetics at the Institute of Biological Sciences, Faculty of Science, Universiti Malaya. She has been working with actinomycetes since 1998, particularly in the aspects of diversity and taxonomy. She has expanded her research interests to include natural product discovery, bacterial diversity and microbiome studies. Professor Tan is a Life Member and the current Assistant Secretary of the Malaysian Society for Microbiology.

MA25043_B3.gif

Dr Noraziah Mohamad Zin is a Professor in Medical Microbiology at Universiti Kebangsaan Malaysia. Her research interests include pathogenic bacteria, bacterial metabolites and their applications in addressing antimicrobial resistance. Professor Nora is a Life Member of the Malaysian Society for Microbiology.

References

Haruna E, Zin NM, Kerfahi D, Adams JM. Extensive overlap of tropical rainforest bacterial endophytes between soil, plant parts, and plant species. Microb Ecol 2018; 75(1): 88-103.
| Crossref | Google Scholar | PubMed |

Oren A, Garrity GM. Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol 2021; 71(10): 5056.
| Crossref | Google Scholar |

Bacon CW, White JF. Microbial Endophytes. NY: Marcel Dekker; 2000. pp. 3–29.

Donald L, Pipite A, Subramani R, Owen J, Keyzers RA, Taufa T. Streptomyces: still the biggest producer of new natural secondary metabolites, a current perspective. Microbiol Res 2022; 13(3): 418-465.
| Google Scholar |

Lee LH, Zainal N, Azman AS, Eng SK, Goh BH, Yin WF, Ab Mutalib NS, Chan KG. Diversity and antimicrobial activities of actinobacteria isolated from tropical mangrove sediments in Malaysia. Sci World J 2014; 1: 698178.
| Crossref | Google Scholar | PubMed |

Abidin ZAZ, Chowdhury AJK, Malek NA, Zainuddin Z. Diversity, antimicrobial capabilities, and biosynthetic potential of mangrove actinomycetes from coastal waters in Pahang, Malaysia. J Coast Res 2018; 82: 174-179.
| Crossref | Google Scholar |

Abdul Malek N, Zainuddin Z, Chowdhury AJK, Abidin ZAZ. Diversity and antimicrobial activity of mangrove soil actinomycetes isolated from Tanjung Lumpur, Kuantan. J Teknologi 2015; 77(25): 37-43.
| Crossref | Google Scholar |

Abidin ZAZ, Ahmad A, Usup G, Chowdhury AJK. Marine actinomycetes from Malaysia marine environments with antagonistic potential. Desalin Water Treat 2021; 219: 51-59.
| Crossref | Google Scholar |

Ng ZY, Tan GYA. Selective isolation and characterisation of novel members of the family Nocardiopsaceae and other actinobacteria from a marine sediment of Tioman Island. Antonie van Leeuwenhoek 2018; 111(5): 727-742.
| Crossref | Google Scholar | PubMed |

10  Law JW-F, Chan K-G, He Y-W, Mehmood Khan T, Ab Mutalib N-S, Goh B-H, Lee L-H. Diversity of Streptomyces spp. from mangrove forest of Sarawak (Malaysia) and screening of their antioxidant and cytotoxic activities. Sci Rep 2019; 9(1): 15262.
| Crossref | Google Scholar |

11  Sarmin NIM, Tan G, Franco C, Edrada-Ebel R, Latip J, Zin NM. Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid. Int J Syst Evol Microbiol 2013; 63: 3733-3738.
| Crossref | Google Scholar | PubMed |

12  Lee LH, Azman AS, Zainal N, Eng SK, Mutalib NA, Yin WF, Chan KG. Microbacterium mangrovi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil. Int J Syst Evol Microbiol 2014; 64: 3513-3519.
| Crossref | Google Scholar | PubMed |

13  Lee LH, Zainal N, Azman AS, Mutalib NA, Hong K, Chan KG. Mumia flava gen. nov., sp. nov., an actinobacterium of the family Nocardioidaceae. Int J Syst Evol Microbiol 2014; 64: 1461-1467.
| Crossref | Google Scholar | PubMed |

14  Lee L-H, Zainal N, Azman A-S, Eng S-K, Ab Mutalib N-S, Yin W-F, Chan K-G. Streptomyces pluripotens sp. nov., a bacteriocin-producing streptomycete that inhibits meticillin-resistant Staphylococcus aureus. Int J Syst Evol Microbiol 2014; 64: 3297-3306.
| Crossref | Google Scholar | PubMed |

15  Lee L-H, Azman A-S, Zainal N, Yin W-F, Ab Mutalib N-S, Chan K-G. Sinomonas humi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil. Int J Syst Evol Microbiol 2016; 65: 996-1002.
| Crossref | Google Scholar |

16  Azman A-S, Zainal N, Mutalib N-A, Yin W-F, Chan K-G, Lee L-H. Monashia flava gen. nov., sp. nov., an actinobacterium of the family Intrasporangiaceae. Int J Syst Evol Microbiol 2016; 66: 554-561.
| Crossref | Google Scholar | PubMed |

17  Ser H-L, Palanisamy UD, Yin W-F, Chan K-G, Goh B-H, Lee L-H. Streptomyces malaysiense sp. nov.: a novel Malaysian mangrove soil actinobacterium with antioxidative activity and cytotoxic potential against human cancer cell lines. Sci Rep 2016; 6: 24247.
| Crossref | Google Scholar | PubMed |

18  Law JW-F, Ser H-L, Duangjai A, Saokaew S, Bukhari SI, Khan TM, Ab Mutalib N-S, Chan K-G, Goh B-H, Lee L-H. Streptomyces colonosanans sp. nov., a novel actinobacterium isolated from Malaysia mangrove soil exhibiting antioxidative activity and cytotoxic potential against human colon cancer cell lines. Front Microbiol 2017; 8: 877.
| Crossref | Google Scholar | PubMed |

19  Law JW-F, Ser H-L, Ab Mutalib N-S, Saokaew S, Duangjai A, Khan T-M, Chan K-G, Goh B-H, Lee L-H. Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Malaysia with antioxidative potential. Sci Rep 2019; 9: 3056.
| Crossref | Google Scholar | PubMed |

20  Ng Z-Y, Fang B-Z, Li W-J, Tan G. Marinitenerispora sediminis gen. nov., sp. nov., a member of the family Nocardiopsaceae isolated from marine sediment. Int J Syst Evol Microbiol 2019; 69: 3031-3040.
| Crossref | Google Scholar | PubMed |

21  Lee ZY, Ng ZY, Mohd Nor MN, Teo W, Tan G. Streptomyces solincola sp. nov., isolated from soil in Malaysia. Int J Syst Evol Microbiol 2022; 72: 5594.
| Crossref | Google Scholar | PubMed |

22  Teo WFA, Devaraj K, Nor M, Li W-J, Tan G. Sciscionella sediminilitoris sp. nov., a marine actinomycete isolated from Cape Rochado, Malaysia, and the emendations to the description of the genus Sciscionella. Curr Microbiol 2024; 81: 124.
| Crossref | Google Scholar | PubMed |

23  Basik AA, Juboi H, Shamsul SSG, Sanglier J-J, Yeo TC. Actinomycetes isolated from wetland and hill paddy during the warm and cool seasons in Sarawak, East Malaysia. J Microbiol Biotechnol Food Sci 2020; 49: 774-780.
| Crossref | Google Scholar |

24  Juboi H, Hwang SS, Yeo TC, Nissom PM. Antimicrobial activities of Plantactinospora sp. KBS50, a rare marine-derived actinomycete from the coastal area of Sarawak. Malays J Microbiol 2019; 15: 111-119.
| Crossref | Google Scholar |

25  Mahmud F, Maili S, Aziz DN, Marajin L, Jembun M, How SE, Gansau JA, Sidek HM, Embi N, Lee PC. The isolation rate of culturable actinomycetes from Malaysian Borneo forests and their activity against mammalian GSK-3β. Curr Appl Sci Technol 2022; 22(4): 1-14.
| Crossref | Google Scholar |

26  Muramatsu H, Murakami R, Ibrahim ZH, Murakami K, Shahab N, Nagai K. Phylogenetic diversity of acidophilic actinomycetes from Malaysia. J Antibiot 2011; 64(9): 621-624.
| Crossref | Google Scholar | PubMed |

27  Azmin NRAM, Sarmin NIM, Khan HBSG, Zainal M. Identification of endophytic actinomycetes isolated from Hopea ferrea and its antibacterial activity against cariogenic bacterium. Malays Appl Biol 2024; 53: 37-46.
| Crossref | Google Scholar |

28  Ramasamy K, Lim SM, Abu Bakar H, Ismail N, Ismail MS, Ali MF, Weber JF, Cole AL. Antimicrobial and cytotoxic activities of Malaysian endophytes. Phytother Res 2010; 24(5): 640-643.
| Crossref | Google Scholar | PubMed |

29  Azman A-S, Othman I, Fang C-M, Chan K-G, Goh B-H, Lee L-H. Antibacterial, anticancer and neuroprotective activities of rare actinobacteria from mangrove forest soils. Indian J Microbiol 2017; 57: 177-187.
| Crossref | Google Scholar | PubMed |

30  Amelia-Yap ZH, Low VL, Saeung A, Ng FL, Chen CD, Hassandarvish P, Tan G, AbuBakar S, Azman AS. Insecticidal activities of Streptomyces sp. KSF103 ethyl acetate extract against medically important mosquitoes and non-target organisms. Sci Rep 2023; 13(1): 4.
| Crossref | Google Scholar | PubMed |

31  Chaiya L, Kumla J, Suwannarach N, Kiatsiriroat T, Lumyong S. Isolation, Characterization, and Efficacy of Actinobacteria Associated with Arbuscular Mycorrhizal Spores in Promoting Plant Growth of Chili (Capsicum flutescens L.). Microorganisms 2021; 9(6): 1274-1287.
| Crossref | Google Scholar | PubMed |

32  Remali J, Sarmin N’M, Ng CL, Tiong JJL, Aizat WM, Keong LK, Zin NM. Genomic characterization of a new endophytic Streptomyces kebangsaanensis identifies biosynthetic pathway gene clusters for novel phenazine antibiotic production. PeerJ 2017; 29(5): e3738.
| Crossref | Google Scholar | PubMed |

33  Ahmad SJ, Zin NM, Mazlan NW, Baharum SN, Baba MS, Lau YL. Metabolite profiling of endophytic Streptomyces spp. and its antiplasmodial potential. PeerJ 2021; 9: e10816.
| Crossref | Google Scholar |