Recent evolutionary history of New Zealand’s North and South Island Kokako (Callaeas cinerea) inferred from mitochondrial DNA sequences
S. A. Murphy A C , I. A. Flux B and M. C. Double AA School of Botany and Zoology, Australian National University, ACT 0200, Australia.
B Research, Development and Improvement Division, Department of Conservation, Wellington, New Zealand.
C Corresponding author. Present address: Australian Wildlife Conservancy, PMB 925, Derby, WA 6728, Australia. Email: Steve@australianwildlife.org
Emu 106(1) 41-48 https://doi.org/10.1071/MU05007
Submitted: 2 February 2005 Accepted: 22 December 2005 Published: 10 March 2006
Abstract
The Kokako (Callaeas cinerea) is an endangered, forest-dependent bird belonging to the endemic New Zealand family Callaeidae, the New Zealand wattlebirds. Two subspecies of Kokako are recognised: the now extinct orange-wattled South Island Kokako (SI Kokako) and the blue-wattled North Island Kokako (NI Kokako). The latter is the subject of intense conservation management and several populations have now been established on offshore island reserves. This study aimed to investigate the recent evolutionary history of Kokako through an assessment of the sequence variation and geographical distribution of mitochondrial haplotypes. We sequenced ~400 bases of the Domain III of the mitochondrial control region for 28 NI Kokako and two SI Kokako. Among NI Kokako, nucleotide diversity was low (0.006) but haplotype diversity was high (0.93). The average nucleotide diversity between NI Kokako and SI Kokako was 0.049 and a phylogenetic analysis revealed well supported reciprocal monophyly between NI Kokako and SI Kokako but no robust structure within NI Kokako. A nested clade analysis detected significant geographical structure in the distribution of the 13 NI Kokako haplotypes but could not identify an evolutionary scenario to explain the distribution. We discuss these findings in the context of the recent climatic and geological history of New Zealand.
Acknowledgments
We thank Te Papa, the National Museum of New Zealand and the Naturhistorisches Museum, Vienna, Austria, for foot-pad biopsies from Callaeidae species. We also thank Professor D. Lambert and Dr T. King of Massey University who kindly provided samples of Saddleback DNA. Quanah Hudson generously provided blood samples from Te Urewera Kokako. We also thank Cathryn Abbott, Nadeena Beck and Sarah Legge for their comments on the manuscript. New Zealand’s Department of Conservation and the Australian National University funded this study. South Island Kokako are a taonga of Poutini Ngai Tahu and North Island Kokako are taonga to northern Iwi. We thank them for their cooperation, and in some cases direct assistance, with the collection and processing of samples. We hope that the information contained in this paper strengthens their knowledge of these taonga.
Abbott, C. L. , and Double, M. C. (2003). Phylogeography of shy and white-capped albatrosses inferred from mitochondrial DNA sequences: implications for population history and taxonomy. Molecular Ecology 12, 2747–2758.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Baker, A. J. , Daugherty, C. H. , Colbourne, R. , and McLennan, J. L. (1995). Flightless brown kiwis of New Zealand possess extremely subdivided population structure and cryptic species like small mammals. Proceedings of the National Academy of Sciences of the United States of America 92, 8254–8258.
| PubMed |
Fleming, C. A. (1962). History of the New Zealand land bird fauna. Notornis 9, 270–274.
Freeland, J. R. , and Boag, P. T. (1999). Phylogenetics of Darwin’s finches: paraphyly in the tree-finches, and two divergent lineages in the Warbler Finch. Auk 116, 577–588.
Hillis, D. M. , and Bull, J. J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42, 182–192.
Knowles, L. L. , and Maddison, W. P. (2002). Statistical phylogeography. Molecular Ecology 11, 2623–2635.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Milá, B. , Girman, D. J. , Kimura, M. , and Smith, T. B. (2000). Genetic evidence for the effect of a postglacial population expansion on the phylogeography of a North American songbird. Proceedings of the Royal Society of London Series B 267, 1033–1040.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Neiman, M. , and Lively, C. M. (2004). Pleistocene glaciation is implicated in the phylogeographical structure of Potamopyrgus antipodarum, a New Zealand snail. Molecular Ecology 13, 3085–3098.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Posada, D. , and Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817–818.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Schultheis, A. S. , Weigt, L. A. , and Hendricks, A. C. (2002). Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians. Molecular Ecology 11, 317–327.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Tarr, C. L. (1995). Primers for amplification and determination of mitochondrial control-region sequences in oscine passerines. Molecular Ecology 4, 527–529.
| PubMed |
Turner, T. F. , Trexler, J. C. , Harris, J. L. , and Haynes, J. L. (2000). Nested cladistic analysis indicates population fragmentation shapes genetic diversity in a freshwater mussel. Genetics 154, 777–785.
| PubMed |
Wenink, P. W. , Baker, A. J. , and Tilanus, M. G. J. (1994). Mitochondrial control-region sequences in two shorebird species, the turnstone and the dunlin, and their utility in population genetic studies. Molecular Biology and Evolution 11, 22–31.
| PubMed |