Register      Login
Functional Plant Biology Functional Plant Biology Society
Plant function and evolutionary biology
RESEARCH ARTICLE (Open Access)

HuGAI1: a key transcription factor upregulated by trypsin, regulating phenylpropanoid biosynthesis, and enhancing fruit shelf life in Hylocereus undatus

Xinyue Pang A * , Xinxin Chen B , Hemin Wang B , Jiaju Sun B , Enyan Chen B , Fuxin Li B , Jingyu Jia B , Bairu Li B and Xin Li https://orcid.org/0000-0002-5976-2988 B C D *
+ Author Affiliations
- Author Affiliations

A College of Medical Technology and Engineering, Henan University of Science and Technology, Luoyang 471023, China.

B College of Food and Bioengineering, Henan University of Science and Technology, Luoyang 471023, China.

C Henan Engineering Research Center of Food Microbiology, Luoyang 471023, China.

D National Demonstration Center for Experimental Food Processing and Safety Education, Luoyang 471000, China.


Handling Editor: Helen Irving

Functional Plant Biology 52, FP23242 https://doi.org/10.1071/FP23242
Submitted: 13 October 2023  Accepted: 14 July 2025  Published: 31 July 2025

© 2025 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND)

Abstract

DELLA proteins can participate in the biosynthesis pathway of flavonoids. It has been shown that trypsin can induce flavonoid synthesis, thereby enhancing the storage quality of Hylocereus undatus (H. undatus) fruit. However, whether trypsin induces flavonoid biosynthesis and improves fruit quality during storage by regulating the phenylpropanoid synthesis pathway through DELLA remains to be further elucidated. To investigate the molecular mechanism of trypsin-induced flavonoid synthesis in H. undatus, we conducted transcriptomic analysis and verified it through virus-induced gene silencing (VIGS). Analysis of transcription factors showed that the top five genes with the largest expression differences regulated by trypsin all belonged to the GRAS family. Further protein network interaction analysis identified HuGAI1 as a hub protein in the GRAS family. Trypsin treatment was able to extend the shelf life of fruit. However, after the expression of HuGAI1 was silenced, the storage quality of the fruit declined. GO and KEGG analysis after HuGAI1 silencing revealed that differentially expressed genes (DEGs) were mainly concentrated in metabolic pathways such as phenylpropanoid, flavonoid, and flavonol biosynthesis. Trypsin can upregulate the expression of HuGAI1. And HuGAI1, by participating in the phenylpropanoid biosynthesis pathway, regulates the biosynthesis of flavonoids and flavonols, leading to an increase in antioxidant flavonoid content and, consequently, enhancing fruit storage.

Keywords: flavonoids, HuGAI1, phenylpropanoid biosynthesis, preservation, transcription factor, transcriptomics, trypsin, virus-induced gene silencing (VIGS).

References

Aoyanagi T, Ikeya S, Kobayashi A, Kozaki A (2020) Gene regulation via the combination of transcription factors in the INDETERMINATE DOMAIN and GRAS families. Genes 11(6), 613.
| Crossref | Google Scholar | PubMed |

Blanco-Touriñán N, Serrano-Mislata A, Alabadí D (2020) Regulation of DELLA proteins by post-translational modifications. Plant and Cell Physiology 61(11), 1891-1901.
| Crossref | Google Scholar | PubMed |

Chen X, Wang H, Li X, Ma K, Zhan Y, Zeng F (2019) Molecular cloning and functional analysis of 4-Coumarate: CoA ligase 4 (4CL-like 1) from Fraxinus mandshurica and its role in abiotic stress tolerance and cell wall synthesis. BMC Plant Biology 19(1), 231.
| Crossref | Google Scholar | PubMed |

Dong N-Q, Lin H-X (2021) Contribution of phenylpropanoid metabolism to plant development and plant–environment interactions. Journal of Integrative Plant Biology 63(1), 180-209.
| Crossref | Google Scholar | PubMed |

Farag MA, Huhman DV, Dixon RA, Sumner LW (2008) Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures. Plant Physiology 146(2), 323-324.
| Crossref | Google Scholar |

Ghasemzadeh A, Jaafar HZE, Rahmat A (2016) Variation of the phytochemical constituents and antioxidant activities of Zingiber officinale var. rubrum theilade associated with different drying methods and polyphenol oxidase activity. Molecules 21(6), 780.
| Crossref | Google Scholar |

Gómez MD, Fuster-Almunia C, Ocaña-Cuesta J, Alonso JM, Pérez-Amador MA (2019) RGL2 controls flower development, ovule number and fertility in Arabidopsis. Plant Science 281, 82-92.
| Crossref | Google Scholar | PubMed |

Huang Y, Brennan MA, Kasapis S, Richardson SJ, Brennan CS (2021) Maturation process, nutritional profile, bioactivities and utilisation in food products of red pitaya fruits: a review. Foods 10(11), 2862.
| Crossref | Google Scholar | PubMed |

Jaiswal V, Kakkar M, Kumari P, Zinta G, Gahlaut V, Kumar S (2022) Multifaceted roles of GRAS transcription factors in growth and stress responses in plants. iScience 25(9), 105026.
| Crossref | Google Scholar | PubMed |

Khan Y, Xiong Z, Zhang H, Liu S, Yaseen T, Hui T (2022) Expression and roles of GRAS gene family in plant growth, signal transduction, biotic and abiotic stress resistance and symbiosis formation – a review. Plant Biology 24(3), 404-416.
| Crossref | Google Scholar | PubMed |

Li X, Tang Z, Pang X, Zhao C, Li X, Liu Y (2017) Trypsin slows the aging of mice due to its novel superoxide scavenging activity. Applied Biochemistry and Biotechnology 181(4), 1549-1560.
| Crossref | Google Scholar | PubMed |

Li X, Liu X, Yin Y, Yu H, Zhang M, Jing H, Ma Y, Xiong X, Pang X (2019) Transcriptomic analysis reveals key genes related to antioxidant mechanisms of Hylocereus undatus quality improvement by trypsin during storage. Food & Function 10(12), 8116-8128.
| Crossref | Google Scholar | PubMed |

Li X, Zhang Y, Zhao S, Li B, Cai L, Pang X (2021) Omics analyses indicate the routes of lignin related metabolites regulated by trypsin during storage of pitaya (Hylocereus undatus). Genomics 113(6), 3681-3695.
| Crossref | Google Scholar | PubMed |

Li X, Zhang Y, Wu Y, Li B, Sun J, Gu S, Pang X (2022) Lipid metabolism regulated by superoxide scavenger trypsin in Hylocereus undatus through multi-omics analyses. Journal of Food Biochemistry 46(7), e14144.
| Crossref | Google Scholar | PubMed |

Li X, Li B, Gu S, Pang X, Mason P, Yuan J, Jia J, Sun J, Zhao C, Henry R (2024) Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence. Nature Communications 15(1), 3108.
| Crossref | Google Scholar | PubMed |

Liu J, Gao Y, Gong F, Hou F, Zhang Z, Cheng X, Du W, Zhang L, Wang J, Xu J, Xing G, Kang X, Li S (2021) The transcriptome and metabolome reveal stress responses in sulfur-fumigated Cucumber (Cucumis sativus L.). Frontiers in Plant Science 12, 778956.
| Crossref | Google Scholar | PubMed |

Locascio A, Blázquez MA, Alabadí D (2013) Genomic analysis of DELLA protein activity. Plant & Cell Physiology 54(8), 1229-1237.
| Crossref | Google Scholar | PubMed |

Nie Q, Gao G-L, Fan Q-J, Qiao G, Wen X-P, Liu T, Peng Z-J, Cai Y-Q (2015) Isolation and characterization of a catalase gene “HuCAT3” from pitaya (Hylocereus undatus) and its expression under abiotic stress. Gene 563(1), 63-71.
| Crossref | Google Scholar | PubMed |

Pang X, Li X, Liu X, Cai L, Li B, Li X (2020) Transcriptomic analysis reveals Cu/Zn SODs acting as Hub genes of SODs in Hylocereus undatus induced by trypsin during storage. Antioxidants 9(2), 162.
| Crossref | Google Scholar | PubMed |

Pang X, Zhao S, Zhang M, Cai L, Zhang Y, Li X (2021) Catechin gallate acts as a key metabolite induced by trypsin in Hylocereus undatus during storage indicated by omics. Plant Physiology and Biochemistry 158, 497-507.
| Crossref | Google Scholar | PubMed |

Peng J, Carol P, Richards DE, King KE, Cowling RJ, Murphy GP, Harberd NP (1997) The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. Genes & Development 11(23), 3194-3205.
| Crossref | Google Scholar | PubMed |

Phokas A, Meyberg R, Briones-Moreno A, Hernandez-Garcia J, Wadsworth PT, Vesty EF, Blazquez MA, Rensing SA, Coates JC (2023) DELLA proteins regulate spore germination and reproductive development in Physcomitrium patens. The New Phytologist 238(2), 654-672.
| Crossref | Google Scholar | PubMed |

Pysh LD, Wysocka-Diller JW, Camilleri C, Bouchez D, Benfey PN (1999) The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. The Plant Journal 18(1), 111-119.
| Crossref | Google Scholar | PubMed |

Sarwar MB, Ahmad Z, Rashid B, Hassan S, Gregersen PL, Leyva MdlO, Nagy I, Asp T, Husnain T (2019) De novo assembly of Agave sisalana transcriptome in response to drought stress provides insight into the tolerance mechanisms. Scientific Reports 9(1), 396.
| Crossref | Google Scholar | PubMed |

Tan H, Man C, Xie Y, Yan J, Chu J, Huang J (2019) A crucial role of GA-regulated flavonol biosynthesis in root growth of Arabidopsis. Molecular Plant 12(4), 521-537.
| Crossref | Google Scholar | PubMed |

Tian C, Wan P, Sun S, Li J, Chen M (2004) Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Molecular Biology 54(4), 519-532.
| Crossref | Google Scholar | PubMed |

Tian S, Qin G, Li B (2013) Reactive oxygen species involved in regulating fruit senescence and fungal pathogenicity. Plant Molecular Biology 82(6), 593-602.
| Crossref | Google Scholar | PubMed |

Tyler L, Thomas SG, Hu J, Dill A, Alonso JM, Ecker JR, Sun T-P (2004) Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiology 135(2), 1008-1019.
| Crossref | Google Scholar | PubMed |

Wang R, Wang G-L, Ning Y (2019) PALs: emerging key players in broad-spectrum disease resistance. Trends in Plant Science 24(9), 785-787.
| Crossref | Google Scholar | PubMed |

Wang P, Zhang Q, Chen Y, Zhao Y, Ren F, Shi H, Wu X (2020) Comprehensive identification and analysis of DELLA genes throughout the plant kingdom. BMC Plant Biology 20(1), 372.
| Crossref | Google Scholar | PubMed |

Wang J, Tian P, Sun J, Li B, Jia J, Yuan J, Li X, Gu S, Pang X (2023a) CsMYC2 is involved in the regulation of phenylpropanoid biosynthesis induced by trypsin in cucumber (Cucumis sativus) during storage. Plant Physiology and Biochemistry 196, 65-74.
| Crossref | Google Scholar |

Wang J, Jia J, Sun J, Pang X, Li B, Yuan J, Chen E, Li X (2023b) Trypsin preservation: CsUGT91C1 regulates Trilobatin Biosynthesis in Cucumis sativus during Storage. Plant Growth Regulation 100(3), 633-646.
| Crossref | Google Scholar |

Xie Y, Yang W, Tang F, Chen X, Ren L (2015) Antibacterial activities of flavonoids: structure-activity relationship and mechanism. Current Medicinal Chemistry 22(1), 132-149.
| Crossref | Google Scholar | PubMed |

Xie Y, Tan H, Ma Z, Huang J (2016) DELLA proteins promote anthocyanin biosynthesis via sequestering MYBL2 and JAZ suppressors of the MYB/bHLH/WD40 complex in Arabidopsis thaliana. Molecular Plant 9(5), 711-721.
| Crossref | Google Scholar | PubMed |

Yang A, Yu L, Chen Z, Zhang S, Shi J, Zhao X, Yang Y, Hu D, Song B (2017) Label-free quantitative proteomic analysis of chitosan oligosaccharide-treated rice infected with Southern rice black-streaked dwarf virus. Viruses 9(5), 115.
| Crossref | Google Scholar | PubMed |

Yoshida H, Hirano K, Sato T, Mitsuda N, Nomoto M, Maeo K, Koketsu E, Mitani R, Kawamura M, Ishiguro S, Tada Y, Ohme-Takagi M, Matsuoka M, Ueguchi-Tanaka M (2014) DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins. Proceedings of the National Academy of Sciences 111(21), 7861-7866.
| Crossref | Google Scholar |

Zhang Z-L, Ogawa M, Fleet CM, Zentella R, Hu J, Heo J-O, Lim J, Kamiya Y, Yamaguchi S, Sun T-P (2011) Scarecrow-like 3 promotes gibberellin signaling by antagonizing master growth repressor DELLA in Arabidopsis. Proceedings of the National Academy of Sciences 108(5), 2160-2165.
| Crossref | Google Scholar |

Zhang L, Chen C, Xie F, Hua Q, Zhang Z, Zhang R, Chen J, Zhao J, Hu G, Qin Y (2021) A Novel WRKY Transcription Factor HmoWRKY40 Associated with Betalain Biosynthesis in Pitaya (Hylocereus monacanthus) through Regulating HmoCYP76AD1. International Journal of Molecular Sciences 22(4), 2171.
| Crossref | Google Scholar | PubMed |

Zhang Y, Li B, Zhang M, Jia J, Sun S, Chen X, Yuan J, Bi X, Pang X, Li X (2022) Transcriptome analyses and virus-induced gene silencing identify HuWRKY40 acting as a hub transcription factor in the preservation of Hylocereus undatus by trypsin. Journal of Food Biochemistry 46(12), e14437.
| Crossref | Google Scholar | PubMed |

Zhang Y, Niu N, Li S, Liu Y, Xue C, Wang H, Liu M, Zhao J (2023) Virus-Induced Gene Silencing (VIGS) in Chinese Jujube. Plants 12(11), 2115.
| Crossref | Google Scholar | PubMed |