CSIRO Publishing blank image blank image blank image blank imageBooksblank image blank image blank image blank imageJournalsblank image blank image blank image blank imageAbout Usblank image blank image blank image blank imageShopping Cartblank image blank image blank image You are here: Journals > Australian Systematic Botany   
Australian Systematic Botany
Journal Banner
  Taxonomy, Biogeography & Evolution of Plants
 
blank image Search
 
blank image blank image
blank image
 
  Advanced Search
   

Journal Home
About the Journal
Editorial Board
Contacts
Content
Current Issue
Just Accepted
All Issues
Special Issues
LAS Johnson Review Series
Sample Issue
For Authors
General Information
Notice to Authors
Submit Article
Open Access
For Referees
Referee Guidelines
Review Article
Annual Referee Index
For Subscribers
Subscription Prices
Customer Service
Print Publication Dates

blue arrow e-Alerts
blank image
Subscribe to our Email Alert or RSS feeds for the latest journal papers.

red arrow Connect with us
blank image
facebook twitter youtube

red arrow Brunonia
blank image
Brunonia, the predecessor journal to Australian Systematic Botany, is available online.

 

Article << Previous     |     Next >>   Contents Vol 27(1)

Molecular phylogenetic analyses of Drakaeinae: Diurideae (Orchidaceae) based on DNA sequences of the internal transcribed spacer region

Joseph T. Miller A C and Mark A. Clements A B

A Centre for Australian National Biodiversity Research, CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601, Australia.
B Australian National Botanic Gardens, GPO Box 1777, Canberra, ACT 2601, Australia.
C Corresponding author. Email: joe.miller@csiro.au

Australian Systematic Botany 27(1) 3-22 http://dx.doi.org/10.1071/SB13036
Submitted: 14 August 2013  Accepted: 1 May 2014   Published: 30 June 2014


 
PDF (941 KB) $40
 Export Citation
 Print
  
Abstract

Results of the analysis of rDNA sequences based on 55 collections representative of 32 Drakaeinae orchid species and outgroups supported the monophyly of the subtribe, with weak support for the inclusion of Spiculaea, and revealed six strongly supported monophyletic, well defined morphological groups. Caleana is monophyletic. Chiloglottis s.lat. is monophyletic when Simpliglottis and Myrmechila are included. Our results also suggested that the segregate genus Phoringopsis is better treated as part of Arthrochilus.There is sufficient molecular and morphological support for recognition of the leafless, mycroheterotrophic Thynninorchis to be maintained as a separate genus. A taxonomic summary is provided, including reassignment of taxa at generic ranks and new combinations for Caleana alcockii (Hopper & A.P.Br.) M.A.Clem., Caleana brockmanii (Hopper & A.P.Br.) M.A.Clem., Caleana disjuncta (D.L.Jones) M.A.Clem., Caleana dixonii (Hopper & A.P.Br.) M.A.Clem., Caleana gracilicordata (Hopper & A.P.Br.) M.A.Clem., Caleana granitica (Hopper & A.P.Br.) M.A.Clem., Caleana hortiorum (Hopper & A.P.Br.) M.A.Clem., Caleana lyonsii (Hopper & A.P.Br.) M.A.Clem., Caleana parvula (Hopper & A.P.Br.) M.A.Clem., Caleana terminalis (Hopper & A.P.Br.) M.A.Clem. and Caleana triens (Hopper & A.P.Br.) M.A.Clem.



References

Backhouse GH, Jeanes J (1995) ‘The Orchids of Victoria.’ (Miegynyah Press: Melbourne)

Bates RJ (1989) Observations on the pollination of Caleana major R.Br. by male sawflies (Pterygophorus sp.). Orchadian 9, 208–210.

Bentham G (1873) ‘Flora Australiensis. Vol. 6.’ (L.Reeve & Co.: London)

Bentham G, Hooker JD (1883) ‘Genera Plantarum. Vol. 3 Part 2.’ (L. Reeve and Co.: London)

Blaxell DF (1972) Arthrochilus F.Muell. and related genera (Orchidaceae) in Australia. Contributions from the NSW National Herbarium 4, 275–283.

Bower CC (2001) Chiloglottis – pollination. In ‘Genera Orchidacearum, Vol. 2: Orchidoideae (Part 1)’. (Eds AM Pridgeon, PJ Cribb, MW Chase, FN Rasmussen) pp 146–148. (Oxford University Press: Oxford, UK)

Brown AP, Dundas P, Dixon K, Hopper SD (2008) ‘Orchids of Western Australia.’ (University of Western Australia Press: Perth)

Cady L (1965) Notes on the pollination of Caleana major R.Br. Orchadian 2, 34–35.

Cameron KM (2004) Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae. Molecular Phylogenetics and Evolution 31, 1157–1180.
CrossRef | CAS | PubMed |

Cameron KM, Chase MW, Whitten WM, Kores PJ, Jarrell DC, Albert VA, Yukawa T, Hills HG, Goldman DH (1999) A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences. American Journal of Botany 86, 208–224.
CrossRef | PubMed |

Chase MW, Cameron CM, Barrett RL, Freudenstein JV (2003) DNA data and Orchdiaceae systematics: a new phylogenetic classification. In ‘Orchid Conservation’. (Eds KW Dixon, SRKell, RL Barrett, PJ Cribb) pp. 69–89. (Natural History Publications (Borneo): Kota Kinabalu, Borneo)

Clements MA (1982) ‘Preliminary Checklist of Australian Orchidaceae.’ (National Botanic Gardens: Canberra)

Clements MA (1989) Catalogue of Australian Orchidaceae. Australian Orchid Research 1, 1–160.

Clements MA (1995) Reproductive biology in relation to phylogeny of the Orchidaceae, especially the tribe Diurideae. PhD Thesis, Australian National University, Canberra.

Clements MA (1996) Reproductive biology in relation to phylogeny of the Orchidaceae, especially the tribe Diurideae Journal and Proceedings of the Royal Society of New South Wales 129, 83 [Abstract]

Clements MA (1999) Embryology. In ‘Genera Orchidacearum. 1’. (Eds AM Pridgeon, PJ Cribb, MW Chase, FN Rasmussen) pp. 38–58. (Oxford University Press: Oxford, UK)

Clements MA, Jones DL, Sharma IK, Nightingale ME, Garratt MJ, FitzGerald KJ, Mackenzie AM, Molloy BPJ (2002) Phylogenetic systematics of the Diurideae (Orchidaceae) based on the ITS and 5.8S coding region of nuclear ribosomal DNA. Lindleyana 17, 135–171.

Cox AV, Pridgeon AM, Albert VA, Chase MW (1997) Phylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): nuclear rDNA ITS sequences. Plant Systematics and Evolution 208, 197–223.
CrossRef |

Dixon KW, Burchellet BJ, Collins MT (1989) ‘Orchids of Western Australia – Cultivation and Natural History’, 2nd edn. (Western Australian Native Orchid Study & Conservation Group: Perth)

Dressler RL (1974) Classification of the orchid family. In ‘Proceedings of 7th World Orchid Conference’, 24–27 April 1972, Medellin, Columbia. (Ed. H Mariano Ospina) pp. 259–279. (Conferencia Mundial de Orquidelogia: Medellin, Columbia)

Dressler RL (1979) The subfamilies of the Orchidaceae. Selbyana 5, 197–206.

Dressler RL (1981) ‘The Orchids: Natural History and Classification.’ (Harvard University Press: Cambridge, MA)

Dressler RL (1983) Classification of the Orchidaceae and their probable origin. Telopea 2, 413–424.

Dressler RL (1986) Recent advances in orchid phylogeny. Lindleyana 1, 5–20.

Dressler RL (1993) ‘Phylogeny and Classification of the Orchid Family.’ (Dioscorides Press: Portland, OR)

Dressler RL, Dodson CH (1960) Classification and phylogeny in the Orchidaceae. Annals of the Missouri Botanical Garden 47, 25–67.
CrossRef |

Erickson R, George AS, Marchant NG, Morcombe MK (1973) ‘Flowers and Plants of Western Australia.’ (AH & AW Reed: Sydney)

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.
CrossRef |

Górniak M, Paun O, Chase MW (2010) Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: congruence with organellar and nuclear ribosomal DNA results. Molecular Phylogenetics and Evolution 56, 784–795.
CrossRef | PubMed |

Green JW (1985) ‘Census of the Vascular Plants of Western Australia.’ 2nd edn. (Department of Agriculture: Perth)

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95–98.

Hoffman N, Brown AP (1984) ‘Orchids of South-west Australia’, 1st edn. (University of Western Australia Press: Perth)

Hoffman N, Brown AP (1992) ‘Orchids of South-west Australia’, 2nd edn. (University of Western Australia Press: Perth)

Hoffman N, Brown AP (2011) ‘Orchids of South-west Australia’, 3rd edn. (Scott Print: Perth)

Hooker JD (1844–1847) ‘The Botany of the Antarctic Voyage of H.M. Discovery Ships Erebus and Terror. I. Flora Antarctica.’ (Reeve: London)

Hopper SD (2009) Taxonomic turmoil down-under: recent developments in Australian orchid systematics. Annals of Botany 104, 447–455.
CrossRef | PubMed |

Hopper SD, Brown AP (2006) Australia’s wasp-pollinated flying duck orchids revised (Paracaleana: Orchidaceae). Australian Systematic Botany 19, 211–244.
CrossRef |

Hopper SD, Brown AP (2007) A revision of Australia’s hammer orchids (Drakaea: Orchidaceae), with some field fata on species-specific sexually deceived wasp pollinations. Australian Systematic Botany 20, 252–285.
CrossRef |

Jeanes J, Backhouse G (2001) ‘Pictorial Guide to: Wild Orchids of Victoria, Australia.’ (Aquatic Photographics: Melbourne)

Jones DL (1988) ‘Native Oirchids of Australia.’ (Reed Books: Sydney)

Jones DL (1998) Contributions to Tasmanian orchidology 1–9: a taxonomic review of Chiloglottis in Tasmania. Australian Orchid Research 3, 61–71.

Jones DL (2006) ‘A complete Guide to Native Orchids of Australia Including the Island Territories.’ (Reed New Holland: Sydney)

Jones DL, Clements MA (2001) Subtribe Drakaeinae. In ‘Genera Orchidacearum, 2. Orchidoideae (Part 1)’. (Eds AM Pridgeon, PJ Cribb, MW Chase, FN Rasmussen) pp. 134–155. (Oxford University Press: Oxford, UK)

Jones DL, Clements MA (2005) Miscellaneous nomenclatural notes and changes in Australian, New Guinea and New Zealand Orchidaceae. Orchadian 15, 33–42.

Jones DL, Clements MA, Sharma IK, Mackenzie AM, Molloy BPJ (2002) Nomenclatural notes arising from studies into the tribe Diurideae (Orchidaceae). Orchadian 13, 437–468.

Jones DL, Hopley T, Duffy SM, Richards KJ, Clements MA, Zhang X (2006) ‘Australian Orchid Genera and Information and Identification System.’ (CSIRO Publishing: Melbourne)

Kores PJ, Cameron KM, Molvray M, Chase MW (1997) The phylogenetic relationships of Orchidoideae and Spiranthoideae (Orchidaceae) as inferred from rbcL plastid sequences. Lindleyana 12, 1–11.

Kores PJ, Weston PH, Molvray M, Chase MW (2000) Phylogenetic relationships within the Diurideae (Orchidaceae): inferences from plastid matK DNA sequences. In ‘Monocots: Systematics and Evolution’. (Eds KL Wilson, DA Morrison) pp. 449–456. (CSIRO Publishing: Melbourne)

Kores PJ, Molvray M, Weston PW, Hopper SD, Brown AP, Cameron KM, Chase MW (2001) A phylogenetic analysis of Diurideae (Orchidaceae) based on plastid DNA sequence data. American Journal of Botany 88, 1903–1914.
CrossRef | CAS | PubMed |

Lindley J (1840a) ‘The Genera and Species of Orchidaceous Plants.’ (Ridgways, Picadilly: London)

Lindley J (1840b) A sketch of the vegetation of the Swan River Colony. (James Ridgway: London)

Mant JG, Schiestl FP, Peakall R, Weston PH (2002) A phylogenetic study of pollinator conservatism among sexually deceptive orchids. Evolution 56, 888–898.
CrossRef | CAS | PubMed |

Pfeiffer L (1874) Nomenclator botanicus, Vol. 1, part 2. p. 1134. (T. Fischeri: Kassel, Germany)

Pfitzer EHH (1887) ‘Entwurf einer natürlichen Anordnung der Orchideen.’ (Carl Winter’s Universitätsbuchhandlung: Heidelberg, Germany)

Pfitzer EHH (1889) Orchidaceae. In ‘Die Natürlichen Pflanzenfamilien’. (Eds A Engler, K Prantl) pp. 1–220. (Wilhelm Engelmann: Leipzig, Germany)

Phillips RD, Brown AP, Dixon KW, Hopper SD (2011) Orchid biogeography and the factors associated with rarity in a biodiversity hotspot: the South west Australia Floristic Region. Journal of Biogeography 38, 487–501.
CrossRef |

Reichenbach HG (1871) Bemerkungen für eine Australische Orchideenkunde. In ‘Beiträge zur systematischen Pflanzenkunde’. pp. 53–70. (Druck von ThG Meissner: Hamburg, Germany)

Rogers RS (1921) Notes on the gynostemium in the genus Diuris, and on the polinary mechanism in Phajus. Transactions and Proceedings of the Royal Society of South Australia 45, 264–269.

Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.
CrossRef | CAS | PubMed |

Rye BL (1987) Paracaleana. In ‘Flora of the Perth region’. (Eds NG Marchant, JR Wheeler, BL Rye, EM Bennett, NS Lander, TD Macfarlane) pp. 807–844. (Western Australian Herbarium, Department of Agriculture: Perth)

Salazar GA, Chase MW, Soto Arenas MA, Ingrouille M (2003) Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): evidence from plastid and nuclear DNA Sequences. American Journal of Botany 90, 777–795.
CrossRef | CAS | PubMed |

Salazar GA, Cabrera LI, Madriñán S, Chase MW (2009) Phylogenetic relationships of Cranichidinae and Prescottiinae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences. Annals of Botany 104, 403–416.
CrossRef | CAS | PubMed |

Schlechter R (1911) Die Polychondreae (Neottiinae Pfitz.) und ihre systematische Einteilung. Botanische Jahrbucher fur Systematik, Pflanzengeschichte und Pflanzengeographie 45, 375–410.

Schlechter R (1926) Das System der Orchidaceen Notizblatt des Botanischen Gartens und Museums zu Berlin-Dahlem 9, 563–591.
CrossRef |

St George I (1999) ‘The Nature Guide to New Zealand Native Orchids’. (Godwit: Auckland)

St George I (2010) The NZ orchids: the editor’s annual list. New Zealand Native Orchid Journal 115, 31–40.

Sun T, Skinner DZ, Liang GH, Hulbert SH (1994) Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of the nuclear ribosomal DNA. Theoretical and Applied Genetics 89, 26–32.
CrossRef | CAS |

Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. (Sinauer Associates: Sunderland, MA, USA)

Szlachetko DL (1991) Thelymitroideae, a new subfamily within Orchidaceae. Fragmenta Floristica et Geobotanica 36, 33–49.

Szlachetko DL (2001) Genera et species Orchidalium. I. Polish Botanical Journal 46, 11–26.

Szlachetko DL (2003) Quelques notes additionnelles sur al sous-famille Thelymitroideae (Orchidaceae). Richardiana 3, 90–100.

Szlachetko DL, Rutkowski P (2002) Quelques notes additionnelles sur la sous-famille Thelymitroideae (Orchidaceae). Richardiana 3, 90–100.

von Mueller F (1889) Description of a new form of the orchid genus Drakaea, indigenous to New South Wales and Victoria. Victorian Naturalist 5, 174–175.

Warwick SI, Mummenhoff K, Sauder CA, Koch MA, Al-Shebaz IA (2010) Closing the gaps: phylogentic relationships in the Brassicaceae based on DNA sequence data of nuclear ribosomal ITS region. Plant Systematics and Evolution 285, 209–232.
CrossRef | CAS |

Weber JZ, Bates RJ (1986) Orchidaceae. In ‘Flora of South Australia. Part IV’. 4th edn. (Eds JP Jessop, HR Toelken) pp. 60–62. (The Flora and Fuana of South Australia Handbooks Committee: Adelaide)

Weston PH, Perkins AJ, Indsto JO, Clements MA (in press). Phylogeny of Orchidaceae tribe Diurideae and it implications for the evolution of pollination systems. In ‘Darwin’s Orchids: Then and Now’. (Eds P Bernhardt, R Edens-Meier) (University of Chicago Press: Chicago, IL)

Woolcock DT, Woolcock CE (1984) ‘Australian Terrestrial Orchids.’ (Thomas Nelson: Melbourne)


   
Subscriber Login
Username:
Password:  

 
    
Legal & Privacy | Contact Us | Help

CSIRO

© CSIRO 1996-2014