Register      Login
Australian Systematic Botany Australian Systematic Botany Society
Taxonomy, biogeography and evolution of plants
RESEARCH ARTICLE

Bush peas: a rapid radiation with no support for monophyly of Pultenaea (Fabaceae: Mirbelieae)

L. A. Orthia A B D , M. D. Crisp A , L. G. Cook A and R. P. J. de Kok B C
+ Author Affiliations
- Author Affiliations

A School of Botany and Zoology, Australian National University, Canberra, ACT 0200, Australia.

B Centre for Plant Biodiversity Research, The Australian National Herbarium, CSIRO, GPO Box 1600, Canberra, ACT 2601, Australia.

C Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AD, UK.

D Corresponding author. Email: lindy.orthia@anu.edu.au

Australian Systematic Botany 18(2) 133-147 https://doi.org/10.1071/SB04028
Submitted: 29 July 2004  Accepted: 13 January 2005   Published: 20 May 2005

Abstract

Phylogenetic hypotheses are presented for Pultenaea based on cpDNA (trnL–F and ndhF) and nrDNA (ITS) sequence data. Pultenaea, as it is currently circumscribed, comprises six strongly supported lineages whose relationships with each other and 18 closely related genera are weak or conflicting among datasets. The lack of resolution among the six Pultenaea clades and their relatives appears to be the result of a rapid radiation, which is evident in molecular data from both the chloroplast and nuclear genomes. The molecular data provide no support for the monophyly of Pultenaea as it currently stands. Given these results, Pultenaea could split into many smaller genera. We prefer the taxonomically stable alternative of subsuming all 19 genera currently recognised in Pultenaea sensu lato (= the Mirbelia group) into an expanded concept of Pultenaea that would comprise ~470 species.


Acknowledgments

We thank the Australian Biological Resources Study, the Australian Research Council, the Centre for Plant Biodiversity Research and the Australian National University for providing generous grant and / or scholarship funding for this project. We are also grateful to the anonymous referees who provided useful feedback on the manuscript. Simon Gilmore and Greg Chandler produced some of the sequences used here.


References


Bentham, G (1864). ‘Flora Australiensis, Volume II.’ (Lovell Reeve & Co: London)

Bickford SA, Laffan SW, de Kok RPJ, Orthia LA (2004) Spatial analysis of taxonomic and genetic patterns and their potential for understanding evolutionary histories. Journal of Biogeography 31, 1715–1733.
Crossref | GoogleScholarGoogle Scholar | open url image1

Blackall, WE ,  and  Grieve, BJ (1959). ‘How to know Western Australian wildflowers: a key to the flora of the temperate regions of Western Australia.’ (University of Western Australia Press: Nedlands, WA)

Brown, R (1811). Euchilus. In ‘; or, a catalogue of the plants cultivated in the Royal Botanic Garden at Kew’. pp. 17. (Longman, Hurst, Rees, Orme and Brown: London)

Burbidge NT (1960) The phytogeography of the Australian region. Australian Journal of Botany 8, 75–212. open url image1

Cameron, BG ,  and  Prakash, N (1994). Variations of the megagametophyte in the Papilionoideae. In ‘Advances in legume systematics. Part 6, Structural botany’. pp. 97–115. (Royal Botanic Gardens Kew: London)

Chandler GT, Bayer RJ, Crisp MD (2001) A molecular phylogeny of the endemic Australian genus Gastrolobium (Fabaceae: Mirbelieae) and allied genera using chloroplast and nuclear markers. American Journal of Botany 88, 1675–1687. open url image1

Chandler GT, Crisp MD, Cayzer LW, Bayer RJ (2002) Monograph of Gastrolobium (Fabaceae: Mirbelieae). Australian Systematic Botany 15, 619–739.
Crossref | GoogleScholarGoogle Scholar | open url image1

Corrick MG (1976) Bush-peas of Victoria—genus Pultenaea no. 1. Victorian Naturalist 93, 176–179. open url image1

Crisp MD (1982) Pultenaea elachista. Journal of the Adelaide Botanic Gardens 6, 66. open url image1

Crisp, MD ,  and  Weston, PH (1987). Cladistics and legume systematics, with an analysis of the Bossiaeeae, Brongniartieae and Mirbelieae (Papilionoideae, Leguminosae). In ‘Advances in legume systematics. Part 3’. pp. 65–130. (Royal Botanic Gardens Kew: London)

Crisp MD, Weston PH (1991) Almaleea, a new genus of Fabaceae from south-eastern Australia. Telopea 4, 307–311. open url image1

Crisp, MD ,  and  Weston, PH (1995). Mirbelieae. In ‘Advances in legume systematics. Part 7, Phylogeny’. pp. 245–282. (Royal Botanic Gardens Kew: London)

Crisp, MD ,  and  Cook, LG (2003a). Phylogeny and embryo sac evolution in the endemic Australasian papilionoid tribes Mirbelieae and Bossiaeeae. In ‘Advances in legume systematics. Part 10, Higher level systematics’. a. pp. 253–268. (Royal Botanic Gardens Kew: London)

Crisp MD, Cook LG (2003b) Molecular evidence for definition of genera in the Oxylobium group (Fabaceae: Mirbelieae). Systematic Botany 28, 705–713. open url image1

Crisp MD, Gilmore SR, Weston PH (1999) Phylogenetic relationships of two anomalous species of Pultenaea (Fabaceae: Mirbelieae), and description of a new genus. Taxon 48, 701–714. open url image1

Crisp, MD , Gilmore, S ,  and  Van Wyk, B-E (2000). Molecular phylogeny of the genistoid tribes of papilionoid legumes. In ‘Advances in legume systematics. Part 9’. pp. 249–276. (Royal Botanic Gardens Kew: London)

Crisp MD, Cook LG, Steane DA (2004) Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philosophical Transactions of the Royal Society of London B 359, 1551–1571. open url image1

de Candolle, AC (1825). ‘. Vol. II.’ (Treuttel and Wütz: Paris)

de Kok RPJ, West JG (2002) A revision of Pultenaea (Fabaceae) I. Species with ovaries glabrous and / or with tufted hairs. Australian Systematic Botany 15, 81–113.
Crossref | GoogleScholarGoogle Scholar | open url image1

de Kok RPJ, West JG (2003) A revision of Pultenaea Sm. (Fabaceae) 2. The eastern species with velutinous ovaries and incurved leaves. Australian Systematic Botany 16, 229–273.
Crossref | GoogleScholarGoogle Scholar | open url image1

de Kok RPJ, West JG (2004) A revision of the genus Pultenaea (Fabaceae) 3. The eastern species with recurved leaves. Australian Systematic Botany 17, 273–326.
Crossref | GoogleScholarGoogle Scholar | open url image1

Ewart AJ, White J (1908) Contributions to the Flora of Australia, No. 10. Proceedings of the Royal Society of Victoria 21, 540–549. open url image1

Faith DP, Trueman JWH (1996) When the topology-dependent permutation test (T-PTP) for monophyly returns significant support for monophyly, should that be equated with (a) rejecting a null hypothesis of nonmonophyly, (b) rejecting a null hypothesis of ‘no structure,’ (c) failing to falsify a hypothesis of monophyly, or (d) none of the above? Systematic Biology 45, 580–586. open url image1

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791. open url image1

Frakes, LA (1999). Evolution of Australian environments. In ‘Flora of Australia. Volume 1, Introduction (2nd edn)’. pp. 163–203. (Australian Biological Resources Study: Canberra, ACT)

Grieve, BJ (1998). ‘How to Know Western Australian Wildflowers, Part II.’ (University of Western Australia Press: Nedlands, WA)

Hall TA (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95 / 98 / NT. Nucleic Acids Symposium Series 41, 95–98. open url image1

Hopper SD, Gioia P (2004) The south-west Australian floristic region: evolution and conservation of a global hotspot of biodiversity. Annual Review of Ecology, Evolution and Systematics 35, 623–650.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lee MSY (2001) Uninformative characters and apparent conflict between molecules and morphology. Molecular Biology and Evolution 18, 676–680. open url image1

Mast AR, Givnish TJ (2002) Historical biogeography and the origin of stomatal distributions in Banksia and Dryandra (Proteaceae) based on their cpDNA phylogeny. American Journal of Botany 89, 1311–1323. open url image1

Mueller, FV (1864). ‘. Vol. IV’. (Auctoritate Guberni Coloniae Victoriae: Melbourne)

Nelson EC (1974) Disjunct plant distributions on the south-western Nullarbor Plain, Western Australia. Journal of the Royal Society of Western Australia 57, 105–116. open url image1

Orthia LA, Cook LG, Crisp MD (2005a) Generic delimitation and phylogenetic uncertainty: an example from a group that has undergone an explosive radiation. Australian Systematic Botany 18, 41–47. open url image1

Orthia LA, de Kok RPJ, Crisp MD (2005b) A revision of Pultenaea (Fabaceae: Mirbelieae): 4. Species occurring in Western Australia. Australian Systematic Botany 18, 149–206. open url image1

Poe S, Chubb AL (2004) Birds in a bush: five genes indicate explosive evolution of avian orders. Evolution 58, 404–415. open url image1

Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817–818.
Crossref | GoogleScholarGoogle Scholar | open url image1

Rogstad SH (1992) Saturated NaCl–CTAB solution as a means of field preservation of leaves for DNA analyses. Taxon 41, 701–708. open url image1

Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.
Crossref | GoogleScholarGoogle Scholar | open url image1

Ross JH (2001) The identity of Bossiaea strigillosa Benth. (Fabaceae: Tribe Bossiaeeae). Muelleria 15, 31–32. open url image1

Sands VE (1966) A cytogenetic investigation of the Australian Leguminosae. PhD thesis (University of Sydney.: )

Sands VE (1975) The cytoevolution of the Australian Papilionaceae. Proceedings of the Linnean Society of New South Wales 100, 118–155. open url image1

Smith JE (1808) Specific characters of the decandrous papilionaceous plants of New Holland. Transactions of the Linnean Society of London 9, 256. open url image1

Stevens PF (1997) How to interpret botanical classifications—suggestions from history. Bioscience 47, 243–250. open url image1

Stevens PF (2002) Why do we name organisms? Some reminders from the past. Taxon 51, 11–26. open url image1

Sturmbauer C, Hainz U, Baric S, Verheyen E, Salzburger W (2003) Evolution of the tribe Tropheini from Lake Tanganyika: synchronized explosive speciation producing multiple evolutionary parallelism. Hydrobiologia 500, 51–64.
Crossref | GoogleScholarGoogle Scholar | open url image1

Swofford, DL (2002). PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. (Sinauer Associates: Sunderland, MA)

Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17, 1105–1109.
Crossref | GoogleScholarGoogle Scholar | open url image1

Thompson J (1961) Papilionaceae, part 1. Contributions from the New South Wales National Herbarium, Flora Series 101, 1–9. open url image1

Turczaninow N (1853) Papilionaceae, part 1. Bulletin de la Societé Imperiale des Naturalistes Moscou Vol. 26, 275–281.

White, TJ , Bruns, T , Lee, S ,  and  Taylor, J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In ‘PCR protocols: a guide to methods and applications’. pp. 312–322. (Academic Press: San Diego, CA)

Williamson HB (1920) A revision of the genus, Pultenaea, part I. Proceedings of the Royal Society of Victoria 32, 210–224. open url image1