Register      Login
Wildlife Research Wildlife Research Society
Ecology, management and conservation in natural and modified habitats
RESEARCH ARTICLE

Comparison of three methods of estimating the population size of an arboreal mammal in a fragmented rural landscape

Mathew S. Crowther https://orcid.org/0000-0001-8968-1161 A , Jessica R. Dargan A , George Madani B , Adrian I. Rus A , Mark B. Krockenberger C D E , Clare McArthur A , Ben D. Moore F , Daniel Lunney A G and Valentina S. A. Mella A
+ Author Affiliations
- Author Affiliations

A School of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia.

B PO Box 3113, Hilltop, NSW 2575, Australia.

C Sydney School of Veterinary Science, University of Sydney, Sydney, NSW 2006, Australia.

D Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, 176 Hawkesbury Road, Westmead, NSW 2145, Australia.

E Veterinary Pathology Diagnostic Services, B14, University of Sydney, Sydney, NSW 2006, Australia.

F Hawkesbury Institute for the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW 2751, Australia.

G Department of Planning, Industry and the Environment, 12 Darcy Street, Parramatta, NSW 2150, Australia.

H Corresponding author. Email: mathew.crowther@sydney.edu.au

Wildlife Research 48(2) 105-114 https://doi.org/10.1071/WR19148
Submitted: 19 August 2019  Accepted: 6 July 2020   Published: 7 September 2020

Abstract

Context: Precise and accurate estimates of animal numbers are often essential for population and epidemiological models, as well as for guidance for population management and conservation. This is particularly true for threatened species in landscapes facing multiple threats. Estimates can be derived by different methods, but the question remains as to whether these estimates are comparable.

Aims: We compared three methods to estimate population numbers, namely, distance sampling, mark–recapture analysis, and home-range overlap analysis, for a population of the iconic threatened species, the koala (Phascolarctos cinereus). This population occupies a heavily fragmented forest and woodland habitat on the Liverpool Plains, north-western New South Wales, Australia, on a mosaic of agricultural and mining lands.

Key results: All three methods produced similar estimates, with overlapping confidence intervals. Distance sampling required less expertise and time and had less impact on animals, but also had less precision; however, future estimates using the method could be improved by increasing both the number and expertise of the observers.

Conclusions: When less intrusive methods are preferred, or fewer specialised practitioners are available, we recommend distance sampling to obtain reliable estimates of koala numbers. Although its precision is lower with a low number of sightings, it does produce estimates of numbers similar to those from the other methods. However, combining multiple methods can be useful when other material (genetic, health and demographic) is also needed, or when decisions based on estimates are for high-profile threatened species requiring greater confidence. We recommend that all estimates of population numbers, and their precision or variation, be recorded and reported so that future studies can use them as prior information, increasing the precision of future surveys through Bayesian analyses.

Additional keywords: distance sampling, GPS-tracking, home-ranges, koala, mark–recapture, population estimation, threatened species.


References

Acevedo, P., Ruiz-Fons, F., Vicente, J., Reyes-García, A. R., Alzaga, V., and Gortázar, C. (2008). Estimating red deer abundance in a wide range of management situations in Mediterranean habitats. Journal of Zoology 276, 37–47.
Estimating red deer abundance in a wide range of management situations in Mediterranean habitats.Crossref | GoogleScholarGoogle Scholar |

Adams-Hosking, C., McBride, M. F., Baxter, G., Burgman, M., de Villiers, D., Kavanagh, R., Lawler, I., Lunney, D., Melzer, A., Menkhorst, P., Molsher, R., Moore, B. D., Phalen, D., Rhodes, J. R., Todd, C., Whisson, D., and McAlpine, C. A. (2016). Use of expert knowledge to elicit population trends for the koala (Phascolarctos cinereus). Diversity & Distributions 22, 249–262.
Use of expert knowledge to elicit population trends for the koala (Phascolarctos cinereus).Crossref | GoogleScholarGoogle Scholar |

Barker, R. J., Forsyth, D. M., and Wood, M. (2014). Modeling sighting heterogeneity and abundance in spatially replicated multiple-observer surveys. The Journal of Wildlife Management 78, 701–708.
Modeling sighting heterogeneity and abundance in spatially replicated multiple-observer surveys.Crossref | GoogleScholarGoogle Scholar |

Benhamou, S. (2011). Dynamic approach to space and habitat use based on biased random bridges. PLoS One 6, e14592.
Dynamic approach to space and habitat use based on biased random bridges.Crossref | GoogleScholarGoogle Scholar | 22046329PubMed |

Benson, J. S., Richards, P. G., Waller, S., and Allen, C. B. (2010). New South Wales vegetation classification and assessment: part 3. Plant communities of the NSW Brigalow Belt South, Nandewar and west New England Bioregions and update of NSW Western Plains and South-western Slopes plant communities, Version 3 of the NSWVCA database. Cunninghamia 11, 457–579.

Börger, L., Dalziel, B. D., and Fryxell, J. M. (2008). Are there general mechanisms of animal home range behaviour? A review and prospects for future research. Ecology Letters 11, 637–650.
Are there general mechanisms of animal home range behaviour? A review and prospects for future research.Crossref | GoogleScholarGoogle Scholar | 18400017PubMed |

Bowler, D. E., and Benton, T. G. (2005). Causes and consequences of animal dispersal strategies: relating individual behaviour to spatial dynamics. Biological Reviews of the Cambridge Philosophical Society 80, 205–225.
Causes and consequences of animal dispersal strategies: relating individual behaviour to spatial dynamics.Crossref | GoogleScholarGoogle Scholar | 15921049PubMed |

Briscoe, N. J., Handasyde, K. A., Griffiths, S. R., Porter, W. P., Krockenberger, A., and Kearney, M. R. (2014). Tree-hugging koalas demonstrate a novel thermoregulatory mechanism for arboreal mammals. Biology Letters 10, 20140235.
Tree-hugging koalas demonstrate a novel thermoregulatory mechanism for arboreal mammals.Crossref | GoogleScholarGoogle Scholar | 24899683PubMed |

Buckland, S. T. (1985). Perpendicular distance models for line transect sampling. Biometrics 41, 177–195.
Perpendicular distance models for line transect sampling.Crossref | GoogleScholarGoogle Scholar | 4005374PubMed |

Buckland, S. T., and Elston, D. A. (1993). Empirical models for the spatial distribution of wildlife. Journal of Applied Ecology 30, 478–495.
Empirical models for the spatial distribution of wildlife.Crossref | GoogleScholarGoogle Scholar |

Buckland, S. T., Anderson, D. R., Burnham, K. P., Laake, J. L., Borchers, D. L., and Thomas, L. (2001). ‘Introduction to Distance Sampling: Estimating Abundance of Biological Populations.’ (Oxford University Press: Oxford, UK)

Bureau of Meteorology (2020). Gunnedah Resource Centre. Available at http://www.bom.gov.au/ [verified 21 August 2020].

Burnham, K. P., and Anderson, D. R. (2002). ‘Model Selection and Multimodel Inference: a Practical Information-theoretic Approach. 2nd edn. (Springer-Verlag: New York, NY, USA.)

Calenge, C. (2006). The package adehabitat for the R software: a tool for the analysis of space and habitat use by animals. Ecological Modelling 197, 516–519.
The package adehabitat for the R software: a tool for the analysis of space and habitat use by animals.Crossref | GoogleScholarGoogle Scholar |

Crowther, M. S., McAlpine, C. A., Lunney, D., Shannon, I., and Bryant, J. V. (2009). Using broad‐scale, community survey data to compare species conservation strategies across regions: a case study of the koala in a set of adjacent ‘catchments’. Ecological Management & Restoration 10, S88–S96.
Using broad‐scale, community survey data to compare species conservation strategies across regions: a case study of the koala in a set of adjacent ‘catchments’.Crossref | GoogleScholarGoogle Scholar |

Crowther, M. S., Lunney, D., Lemon, J., Stalenberg, E., Wheeler, R., Madani, G., Ross, K. A., and Ellis, M. (2014). Climate-mediated habitat selection in an arboreal folivore. Ecography 37, 336–343.
Climate-mediated habitat selection in an arboreal folivore.Crossref | GoogleScholarGoogle Scholar |

Cumming, G. S., and Cornélis, D. (2012). Quantitative comparison and selection of home range metrics for telemetry data. Diversity & Distributions 18, 1057–1065.
Quantitative comparison and selection of home range metrics for telemetry data.Crossref | GoogleScholarGoogle Scholar |

Dargan, J. R., Moriyama, M., Mella, V. S. A., Lunney, D., and Crowther, M. S. (2019). The challenge for koala conservation on private land: koala habitat use varies with season on a fragmented rural landscape. Animal Conservation 22, 543–555.
The challenge for koala conservation on private land: koala habitat use varies with season on a fragmented rural landscape.Crossref | GoogleScholarGoogle Scholar |

Dique, D., Penfold, G., Thompson, J., Leslie, R., and Preece, H. (2001). Koala distribution and density in southeast Queensland: the accuracy and precision of koala surveys. In ‘The Research and Management of Non-urban Koala Populations’. (Eds K. Lyons, A. Melzer, F. Carrick, and D. Lamb.) pp. 105–121. (Koala Research Centre of Central Queensland: Rockhampton, Qld, Australia.)

Dique, D. S., de Villiers, D. L., and Preece, H. J. (2003). Evaluation of line-transect sampling for estimating koala abundance in the Pine Rivers Shire, south-east Queensland. Wildlife Research 30, 127–133.
Evaluation of line-transect sampling for estimating koala abundance in the Pine Rivers Shire, south-east Queensland.Crossref | GoogleScholarGoogle Scholar |

Dique, D. S., Preece, H. J., Thompson, J., and de Villiers, D. L. (2004). Determining the distribution and abundance of a regional koala population in south-east Queensland for conservation management. Wildlife Research 31, 109–117.
Determining the distribution and abundance of a regional koala population in south-east Queensland for conservation management.Crossref | GoogleScholarGoogle Scholar |

Ellis, W. A. H., Melzer, A., and Bercovitch, F. B. (2009). Spatiotemporal dynamics of habitat use by koalas: the checkerboard model. Behavioral Ecology and Sociobiology 63, 1181–1188.
Spatiotemporal dynamics of habitat use by koalas: the checkerboard model.Crossref | GoogleScholarGoogle Scholar |

Ellis, W., FitzGibbon, S., Melzer, A., Wilson, R., Johnston, S., Bercovitch, F., Dique, D., and Carrick, F. (2013). Koala habitat use and population density: using field data to test the assumptions of ecological models. Australian Mammalogy 35, 160–165.
Koala habitat use and population density: using field data to test the assumptions of ecological models.Crossref | GoogleScholarGoogle Scholar |

Gordon, G. (1991). Estimation of the age of the koala, Phascolarctos cinereus (Marsupialia: Phascolarctidae) from tooth wear and growth. Australian Mammalogy 14, 5–12.

Hagens, S. V., Rendall, A. R., and Whisson, D. A. (2018). Passive acoustic surveys for predicting species’ distributions: optimising detection probability. PLoS One 13, e0199396.
Passive acoustic surveys for predicting species’ distributions: optimising detection probability.Crossref | GoogleScholarGoogle Scholar | 30020938PubMed |

Jolly, G. M. (1963). Estimates of population parameters from multiple recapture data with both death and dilution: deterministic model. Biometrika 50, 113–128.
Estimates of population parameters from multiple recapture data with both death and dilution: deterministic model.Crossref | GoogleScholarGoogle Scholar |

Jolly, G. M. (1965). Explicit estimates from capture–recapture data with both death and immigration-stochastic model. Biometrika 52, 225–247.
Explicit estimates from capture–recapture data with both death and immigration-stochastic model.Crossref | GoogleScholarGoogle Scholar | 14341276PubMed |

Krebs, C. J. (1999). ‘Ecological Methodology.’ (Benjamin/Cummings: Menlo Park, CA, USA.)

Lang, R. D. (2008). Defining the original extent and floristic composition of the naturally-treeless grasslands of the Liverpool Plains, North Western Slopes, New South Wales. Cunninghamia 10, 407–421.

Law, B. S., Brassil, T., Gonsalves, L., Roe, P., Truskinger, A., and McConville, A. (2018). Passive acoustics and sound recognition provide new insights on status and resilience of an iconic endangered marsupial (koala Phascolarctos cinereus) to timber harvesting. PLoS One 13, e0205075.
Passive acoustics and sound recognition provide new insights on status and resilience of an iconic endangered marsupial (koala Phascolarctos cinereus) to timber harvesting.Crossref | GoogleScholarGoogle Scholar | 30379836PubMed |

Lunney, D., and Matthews, A. (2004). Conserving the forest mammals of New South Wales. In ‘Conservation of Australia’s Forest Fauna’. 2nd edn. (Ed. D. Lunney.) pp. 988–1021. (Royal Zoological Society of New South Wales: Sydney, NSW, Australia.)

Lunney, D., Crowther, M. S., Wallis, I., Foley, W. J., Lemon, J., Wheeler, R., Madani, G., Orscheg, C., Griffith, J. E., Krockenberger, M., Retamales, M., and Stalenberg, E. (2012a). Koalas and climate change: a case study on the Liverpool Plains, north-west New South Wales. In ‘Wildlife and Climate Change: Towards Robust Conservation Strategies for Australian Fauna’. (Eds D. Lunney, and P. Hutchings.) pp. 150–168. (Royal Zoological Society of New South Wales: Sydney, NSW, Australia.)

Lunney, D., Lemon, J., Crowther, M. S., Stalenberg, E., Ross, K., and Wheeler, R. (2012b). An ecological approach to koala conservation in a mined landscape. In ‘Life-of-Mine Conference 2012’. pp. 345–354. (The Australasian Institute of Mining and Metallurgy: Melbourne, Vic., Australia.)

Marques, F. F. C., and Buckland, S. T. (2003). Incorporating covariates into standard line transect analyses. Biometrics 59, 924–935.
Incorporating covariates into standard line transect analyses.Crossref | GoogleScholarGoogle Scholar |

Marques, T. A., Thomas, L., Fancy, S. G., Buckland, S. T., and Handel, C. M. (2007). Improving estimates of bird density using multiple-covariate distance sampling. The Auk 124, 1229–1243.
Improving estimates of bird density using multiple-covariate distance sampling.Crossref | GoogleScholarGoogle Scholar |

Masters, P., Dickman, C. R., and Crowther, M. (2003). Effects of cover reduction on mulgara Dasycercus cristicauda (Marsupialia: Dasyuridae), rodent and invertebrate populations in central Australia: implications for land management. Austral Ecology 28, 658–665.
Effects of cover reduction on mulgara Dasycercus cristicauda (Marsupialia: Dasyuridae), rodent and invertebrate populations in central Australia: implications for land management.Crossref | GoogleScholarGoogle Scholar |

Matthews, A., Lunney, D., Gresser, S., and Maitz, W. (2016). Movement patterns of koalas in remnant forest after fire. Australian Mammalogy 38, 91–104.
Movement patterns of koalas in remnant forest after fire.Crossref | GoogleScholarGoogle Scholar |

McCarthy, M. A. (2007) ‘Bayesian Methods for Ecology.’ (Cambridge University Press: Cambridge, UK.)

McCarthy, M. A., and Masters, P. (2005). Profiting from prior information in Bayesian analyses of ecological data. Journal of Applied Ecology 42, 1012–1019.
Profiting from prior information in Bayesian analyses of ecological data.Crossref | GoogleScholarGoogle Scholar |

Mella, V. S. A., McArthur, C., Krockenberger, M. B., Frend, R., and Crowther, M. S. (2019). Needing a drink: Rainfall and temperature drive the use of free water by a threatened arboreal folivore. PLoS One 14, e0216964.
Needing a drink: Rainfall and temperature drive the use of free water by a threatened arboreal folivore.Crossref | GoogleScholarGoogle Scholar |

Melzer, A., Carrick, F., Menkhorst, P., Lunney, D., and John, B. S. (2000). Overview, critical assessment, and conservation implications of koala distribution and abundance. Conservation Biology 14, 619–628.
Overview, critical assessment, and conservation implications of koala distribution and abundance.Crossref | GoogleScholarGoogle Scholar |

Moseby, K. E., Crowther, M. S., and Letnic, M. (2019). Ecological role of an apex predator revealed by a reintroduction experiment and Bayesian statistics. Ecosystems 22, 283–295.
Ecological role of an apex predator revealed by a reintroduction experiment and Bayesian statistics.Crossref | GoogleScholarGoogle Scholar |

Newsome, T. M., Crowther, M. S., and Dickman, C. R. (2014). Rapid recolonisation by the European red fox: how effective are uncoordinated and isolated control programs? European Journal of Wildlife Research 60, 749–757.
Rapid recolonisation by the European red fox: how effective are uncoordinated and isolated control programs?Crossref | GoogleScholarGoogle Scholar |

NSW Office of Environment and Heritage (2009). Regional vegetation communities for the Namoi Catchment Management Authority. Bioregional Assessment Source Dataset. Available at http://data.bioregionalassessments.gov.au/dataset/69253ff8-78c0-42b7-a5d0-a8a48021e208 [verified 21 August 2020].

Phillips, S., and Callaghan, J. (2011). The spot assessment technique: a tool for determining localised levels of habitat use by koalas Phascolarctos cinereus. Australian Zoologist 35, 774–780.
The spot assessment technique: a tool for determining localised levels of habitat use by koalas Phascolarctos cinereus.Crossref | GoogleScholarGoogle Scholar |

Prange, S., Gehrt, S. D., and Wiggers, E. P. (2004). Influences of anthropogenic resources on raccoon (Procyon lotor) movements and spatial distribution. Journal of Mammalogy 85, 483–490.
Influences of anthropogenic resources on raccoon (Procyon lotor) movements and spatial distribution.Crossref | GoogleScholarGoogle Scholar |

R Core Team (2016). ‘R: a Language and Environment for Statistical Computing.’ (R Foundation for Statistical Computing: Vienna, Austria.) Available at https://www.R-project.org/ [verified 21 August 2020].

Radford, S. L., McKee, J., Goldingay, R. L., and Kavanagh, R. P. (2006). The protocols for koala research using radio-collars: a review based on its application in a tall coastal forest in New South Wales and the implications for future research. Australian Mammalogy 28, 187–200.
The protocols for koala research using radio-collars: a review based on its application in a tall coastal forest in New South Wales and the implications for future research.Crossref | GoogleScholarGoogle Scholar |

Rinehart, K. A., Elbroch, L. M., and Wittmer, H. U. (2014). Common biases in density estimation based on home range overlap with reference to pumas in Patagonia. Wildlife Biology 20, 19–26.
Common biases in density estimation based on home range overlap with reference to pumas in Patagonia.Crossref | GoogleScholarGoogle Scholar |

Rus, A. I., McArthur, C., Mella, V. S. A., and Crowther, M. S. (2020). Habitat fragmentation affects movement and space use of a specialist folivore, the koala. Animal Conservation , .
Habitat fragmentation affects movement and space use of a specialist folivore, the koala.Crossref | GoogleScholarGoogle Scholar |

Seaman, D. E., Millspaugh, J. J., Kernohan, B. J., Brundige, G. C., Raedeke, K. J., and Gitzen, R. A. (1999). Effects of sample size on kernel home range estimates. The Journal of Wildlife Management 63, 739–747.
Effects of sample size on kernel home range estimates.Crossref | GoogleScholarGoogle Scholar |

Seber, G. A. F. (1982). ‘The Estimation of Animal Abundance and Related Parameters.’ (Hafner Press: New York, NY, USA.)

Thomas, L., Buckland, S. T., Rexstad, E. A., Laake, J. L., Strindberg, S., Hedley, S. L., Bishop, J. R. B., Marques, T. A., and Burnham, K. P. (2010). Distance software: design and analysis of distance sampling surveys for estimating population size. Journal of Applied Ecology 47, 5–14.
Distance software: design and analysis of distance sampling surveys for estimating population size.Crossref | GoogleScholarGoogle Scholar | 20383262PubMed |

Thompson, W. L. (2004). ‘Sampling Rare or Elusive Species: Concepts, Designs, and Techniques for Estimating Population Parameters.’ (Island Press: Washington, DC, USA.)

Vine, S. J., Crowther, M. S., Lapidge, S. J., Dickman, C. R., Mooney, N., Piggott, M. P., and English, A. W. (2009). Comparison of methods to detect rare and cryptic species: a case study using the red fox (Vulpes vulpes). Wildlife Research 36, 436–446.
Comparison of methods to detect rare and cryptic species: a case study using the red fox (Vulpes vulpes).Crossref | GoogleScholarGoogle Scholar |

Whisson, D. A., Dixon, V., Taylor, M. L., and Melzer, A. (2016). Failure to respond to food resource decline has catastrophic consequences for koalas in a high-density population in southern Australia. PLoS One 11, e0144348.
Failure to respond to food resource decline has catastrophic consequences for koalas in a high-density population in southern Australia.Crossref | GoogleScholarGoogle Scholar | 26735846PubMed |

White, G. C., and Burnham, K. P. (1999). Program MARK: survival estimation from populations of marked animals. Bird Study 46, S120–S139.
Program MARK: survival estimation from populations of marked animals.Crossref | GoogleScholarGoogle Scholar |

Wilmott, L., Cullen, D., Madani, G., Krogh, M., and Madden, K. (2019). Are koalas detected more effectively by systematic spotlighting or diurnal searches? Australian Mammalogy 41, 157–160.
Are koalas detected more effectively by systematic spotlighting or diurnal searches?Crossref | GoogleScholarGoogle Scholar |

Woosnam-Merchez, O., Cristescu, R., Dique, D., Ellis, B., Beeton, R. J. S., Simmonds, J., and Carrick, F. (2012). What faecal pellet surveys can and can’t reveal about the ecology of koalas Phascolarctos cinereus. Australian Zoologist 36, 192–200.
What faecal pellet surveys can and can’t reveal about the ecology of koalas Phascolarctos cinereus.Crossref | GoogleScholarGoogle Scholar |