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RESEARCH ARTICLE (Open Access)

The use of genomics in the management of livestock

B. P. Kinghorn
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- Author Affiliations

University of New England, Armidale, NSW 2351, Australia. Email: bkinghor@une.edu.au

Animal Production Science 52(3) 78-91 https://doi.org/10.1071/AN11092
Submitted: 30 May 2011  Accepted: 27 November 2011   Published: 6 March 2012

Journal Compilation © CSIRO Publishing 2012 Open Access CC BY-NC-ND

Abstract

Variation among animals exists at all stages of our livestock supply chains. In contrast, most manufacturing supply chains possess little, if any, unintended variation within each segment. This variation is generally an unwanted nuisance. However, when properly managed, it can provide opportunities to target multiple product end-points and turn-off dates in a dynamic manner. Moreover, optimal management can lead to high degrees of compliance with the needs of the processing segment of the supply chain and/or end-users. Management decisions can be divided into initial group formation (e.g. mating groups, feedlot entry groups) and ongoing changes to the management plan in the light of new information (including market forces, weather and genetic status of animals). In both cases, the best pattern of decision making depends, explicitly or implicitly, on the predicted effect of these decisions on future animal and processing performance. The present paper provides an overview of key factors that affect these predictions, and hence optimal management, and emphasises the potential role of genetic and genomic information for increasing focus and improving profitability in the beef supply chain.


References

Anon (2002) Total resource management. In ‘Annual report 2001/2002’. pp. 41–44. The Cooperative Research Centre for Cattle and Beef Quality. Available at http://www-personal.une.edu.au/~bkinghor/TRM%20Annual%20Report%2002.doc [Verified 8 December 2011]

Cundiff LV, Wheeler TL, Gregory KE, Shackelford SD, Koohmaraie M, Thallman RM, Snowder GD, Van Vleck LD (2004) Preliminary results from cycle VII of the cattle germplasm evaluation program at the Roman L Hruska US Meat Animal Research Center. Germplasm Evaluation Program Progress Report No. 22. USDA–ARS, Clay Center, NE. Available at http://www.ars.usda.gov/SP2UserFiles/Place/54380000/GPE/GPE22.pdf [Verified 8 December 2011]

Doeschl-Wilson AB, Knap PW, Kinghorn BP, van der Steen H (2007) Using mechanistic animal growth models to estimate genetic parameters of biological traits. Animal 1, 489–499.
Using mechanistic animal growth models to estimate genetic parameters of biological traits.Crossref | GoogleScholarGoogle Scholar |

Goddard ME (2012) Uses of genomics in livestock agriculture. Animal Production Science 52, 73–77.
Uses of genomics in livestock agriculture.Crossref | GoogleScholarGoogle Scholar |

Hirooka H (2010) Systems approaches to beef cattle production systemsusing modeling and simulation. Animal Science Journal 81, 411–424.
Systems approaches to beef cattle production systemsusing modeling and simulation.Crossref | GoogleScholarGoogle Scholar |

Kinghorn BP (1999) Total resource management: tactical optimisation of vertically integrated animal production systems. In ‘The application of artificial intelligence, optimisation and Bayesian methods in agriculture’. (Eds HA Abbass, M Towsey) pp. 95–100. (Queensland University of Technology: Brisbane)

Kinghorn BP (2000) Chapter 18: animal production and breeding systems to exploit cloning technology. In ‘Animal breeding – use of new technologies’. (Eds BP Kinghorn, JHJ Van der Werf, M Ryan) pp. 237–245. (The Post Graduate Foundation in Veterinarian Science of the University of Sydney: Sydney)

Kinghorn BP (2008a) Chapter 4: differential evolution. In ‘Application of evolutionary algorithms to solve complex problems in quantitative genetics and bioinformatics’. (Eds C Condro, BP Kinghorn) pp. 33–37. (Centre for Genetic Improvement of Livestock, University of Guelph: Guelph, Canada). Available at http://www-personal.une.edu.au/~bkinghor/Evolutionary_Algorithms_CGIL2008.pdf [Verified 8 December 2011]

Kinghorn BP (2008b) Chapter 6: introduction to problem representation. In ‘Application of evolutionary algorithms to solve complex problems in quantitative genetics and bioinformatics’. (Eds C Condro, BP Kinghorn) pp. 47–54. (Centre for Genetic Improvement of Livestock, University of Guelph: Guelph, Canada). Available at http://www-personal.une.edu.au/~bkinghor/Evolutionary_Algorithms_CGIL2008.pdf [Verified 8 December 2011]

Kinghorn BP (2008c) Chapter 7: managing constraints. In ‘Application of evolutionary algorithms to solve complex problems in quantitative genetics and bioinformatics’. (Eds C Condro, BP Kinghorn) pp. 55–58. (Centre for Genetic Improvement of Livestock, University of Guelph: Guelph, Canada). Available at http://www-personal.une.edu.au/~bkinghor/Evolutionary_Algorithms_CGIL2008.pdf [Verified 8 December 2011]

Kinghorn BP, Bastiaansen JWM, Ciobanu DC, van der Steen HAM (2010a) Quantitative genotyping to estimate genetic contributions to pooled tissue samples and genetic merit of the contributing entities. Acta Agriculture Scandinavica Section Acta 60, 3–12.

Kinghorn BP, Hickey JM, van der Werf JHJ (2010b) Reciprocal recurrent genomic selection for total genetic merit in crossbred individuals. Paper 0036. In ‘Proceedings of the 9th world congress on genetics applied to livestock production, 1–6 August 2010, Leipzig, Germany’. (Ed. Gesellschaft für Tierzuchtwissenschaften e. V.)

Kinghorn BP, Hickey JM, van der Werf JHJ (2011) Long-range phasing and use of crossbred data in genomic selection. In ‘Proceedings of the 7th European symposium on poultry genetics, Peebles, Scotland’, 5–7 October 2011. pp. 7–9. Available at http://www.roslin.ed.ac.uk/7espg/assets/7espg-edited-proceedings.pdf [Verified 4 January 2012]

Kirkpatrick M, Lofsvold D, Bulmer M (1990) Analysis of the inheritance, selection and evolution of growth trajectories. Genetics 124, 979–993.

Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945–959.

Pugh AK, McIntyre BL, Tudor G, Pethick DW (2005) Understanding the effect of gender and age on the pattern of fat deposition in cattle. In ‘Indicators of milk and beef quality’. EAAP publication no.112. (Eds JF Hocquette, S Gigli) pp. 405–408. (Wageningen Academic Publishers: Wageningen, The Netherlands)

Shanks BC, Tess MW, Kress DD, Cunningham BE (2001) Genetic evaluation of carcass traits in Simmental-sired cattle at different slaughter end points. Journal of Animal Science 79, 595–604. Available at http://jas.fass.org/cgi/reprint/79/3/595.pdf [Verified 4 January 2012]

Storn R, Price K (1997) Differential evolution – a simple and efficient heuristic for global optimization over continuous spaces. Journal of Global Optimization 11, 341–359.
Differential evolution – a simple and efficient heuristic for global optimization over continuous spaces.Crossref | GoogleScholarGoogle Scholar |

Walmsley BJ (2007) Modelling of growth and development for optimising beef cattle production systems. PhD Thesis, University of New England, Armidale, NSW.

Walmsley BJ, Oddy VH, McPhee MJ, Mayer DG, McKiernan WA (2010) BeefSpecs a tool for the future: on-farm drafting and optimising feedlot profitability. AFBM Journal 7, 29–35. Available at http://www.beefcrc.com.au/BeefSpecs [Verified 8 December 2011]

Wheeler TL, Cundiff LV, Shackelford SD, Koohmaraie M (2004) Characterization of biological types of cattle (Cycle VI): carcass, yield,and longissimus palatability traits. Journal of Animal Science 82, 1177–1189. Available at http://www.ars.usda.gov/SP2UserFiles/Place/54380530/2004041177.pdf [Verified 4 January 2012]

Zeng J, Toosi A, Fernando RL, Dekkers JCM, Garrick DJ (2011) Genomic selection of purebred animals for crossbred performance under dominance. In ‘Proceedings of the 7th European symposium on poultry genetics, Peebles, Scotland’, 5–7 October 2011. pp. 83–84. Available at http://www.roslin.ed.ac.uk/7espg/assets/7espg-edited-proceedings.pdf [Verified 4 January 2012]