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Australian Journal of Chemistry Australian Journal of Chemistry Society
An international journal for chemical science
RESEARCH ARTICLE (Open Access)

Differential membrane binding of α/β-peptide foldamers: implications for cellular delivery and mitochondrial targeting

Tzong-Hsien Lee A , James W. Checco B G H , Tess Malcolm A I , Chelcie H. Eller C , Ronald T. Raines https://orcid.org/0000-0001-7164-1719 B C , Samuel H. Gellman B , Erinna F. Lee D E F , W. Douglas Fairlie D E F and Marie-Isabel Aguilar https://orcid.org/0000-0002-0234-4064 A *
+ Author Affiliations
- Author Affiliations

A Department of Biochemistry and Molecular Biology, Monash University, Clayton, Vic. 3800, Australia.

B Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.

C Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.

D Department of Biochemistry and Chemistry, School of Agriculture, Biomedicine and Environment, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Vic. 3086, Australia.

E Cell Death and Survival Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Vic. 3084, Australia.

F School of Cancer Medicine, La Trobe University, Melbourne, Vic. 3086, Australia.

G Present address: Department of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

H Present address: The Nebraska Center for Integrated Biomolecular Communication (NCIBC), University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

I Present address: School of Chemistry, University of Melbourne, Parkville, Vic. 3052, Australia.

* Correspondence to: Mibel.aguilar@monash.edu

Handling Editor: John Wade

Australian Journal of Chemistry 76(8) 482-492 https://doi.org/10.1071/CH23063
Submitted: 29 March 2023  Accepted: 9 May 2023   Published: 14 June 2023

© 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND)

Abstract

The intrinsic pathway of apoptosis is regulated by the Bcl-2 family of proteins. Inhibition of the anti-apoptotic members represents a strategy to induce apoptotic cell death in cancer cells. We have measured the membrane binding properties of a series of peptides, including modified α/β-peptides, designed to exhibit enhanced membrane permeability to allow cell entry and improved access for engagement of Bcl-2 family members. The peptide cargo is based on the pro-apoptotic protein Bim, which interacts with all anti-apoptotic proteins to initiate apoptosis. The α/β-peptides contained cyclic β-amino acid residues designed to increase their stability and membrane permeability. Dual polarisation interferometry was used to study the binding of each peptide to two different model membrane systems designed to mimic either the plasma membrane or the outer mitochondrial membrane. The impact of each peptide on the model membrane structure was also investigated, and the results demonstrated that the modified peptides had increased affinity for the mitochondrial membrane and significantly altered the structure of the bilayer. The results also showed that the presence of an RRR motif significantly enhanced the ability of the peptides to bind to and insert into the mitochondrial membrane mimic, and provide insights into the role of selective membrane targeting of peptides.

Keywords: apoptosis, Bcl mimetics, dual polarisation interferometry, membrane permeability, membranes, mitochondrial membrane, peptides, peptidomimetics.


References

[1]  EF Lee, WD Fairlie, Discovery, development and application of drugs targeting BCL-2 pro-survival proteins in cancer. Biochem Soc Trans 2021, 49, 2381.
         | Discovery, development and application of drugs targeting BCL-2 pro-survival proteins in cancer.Crossref | GoogleScholarGoogle Scholar |

[2]  EF Lee, TJ Harris, S Tran, M Evangelista, S Arulananda, T John, C Ramnac, C Hobbs, H Zhu, G Gunasingh, D Segal, A Behren, J Cebon, A Dobrovic, JM Mariadason, A Strasser, L Rohrbeck, NK Haass, MJ Herold, WD Fairlie, BCL-XL and MCL-1 are the key BCL-2 family proteins in melanoma cell survival. Cell Death Dis 2019, 10, 342.
         | BCL-XL and MCL-1 are the key BCL-2 family proteins in melanoma cell survival.Crossref | GoogleScholarGoogle Scholar |

[3]  ST Diepstraten, MA Anderson, PE Czabotar, G Lessene, A Strasser, GL Kelly, The manipulation of apoptosis for cancer therapy using BH3-mimetic drugs. Nat Rev Cancer 2022, 22, 45.
         | The manipulation of apoptosis for cancer therapy using BH3-mimetic drugs.Crossref | GoogleScholarGoogle Scholar |

[4]  PE Czabotar, G Lessene, A Strasser, JM Adams, Control of apoptosis by the BCL-2 protein family: implications for physiology and therapy. Nat Rev Mol Cell Biol 2014, 15, 49.
         | Control of apoptosis by the BCL-2 protein family: implications for physiology and therapy.Crossref | GoogleScholarGoogle Scholar |

[5]  JW Checco, EF Lee, M Evangelista, NJ Sleebs, K Rogers, A Pettikiriarachchi, NJ Kershaw, GA Eddinger, DG Belair, JL Wilson, CH Eller, RT Raines, WL Murphy, BJ Smith, SH Gellman, WD Fairlie, α/β-Peptide Foldamers Targeting Intracellular Protein–Protein Interactions with Activity in Living Cells. J Am Chem Soc 2015, 137, 11365.
         | α/β-Peptide Foldamers Targeting Intracellular Protein–Protein Interactions with Activity in Living Cells.Crossref | GoogleScholarGoogle Scholar |

[6]  TH Lee, DJ Hirst, K Kulkarni, MP Del Borgo, MI Aguilar, Exploring Molecular–Biomembrane Interactions with Surface Plasmon Resonance and Dual Polarization Interferometry Technology: Expanding the Spotlight onto Biomembrane Structure. Chem Rev 2018, 118, 5392.
         | Exploring Molecular–Biomembrane Interactions with Surface Plasmon Resonance and Dual Polarization Interferometry Technology: Expanding the Spotlight onto Biomembrane Structure.Crossref | GoogleScholarGoogle Scholar |

[7]  PR Guzzo, MJ Miller, Catalytic, asymmetric synthesis of the carbacephem framework. J Org Chem 1994, 59, 4862.
         | Catalytic, asymmetric synthesis of the carbacephem framework.Crossref | GoogleScholarGoogle Scholar |

[8]  HS Lee, PR LePlae, EA Porter, SH Gellman, An efficient route to either enantiomer of orthogonally protected trans-3-aminopyrrolidine-4-carboxylic acid. J Org Chem 2001, 66, 3597.
         | An efficient route to either enantiomer of orthogonally protected trans-3-aminopyrrolidine-4-carboxylic acid.Crossref | GoogleScholarGoogle Scholar |

[9]  WS Horne, JL Price, SH Gellman, Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly. Proc Natl Acad Sci U S A 2008, 105, 9151.
         | Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly.Crossref | GoogleScholarGoogle Scholar |

[10]  JA de Feijter, J Benjamins, FA Veer, Ellipsometry as a tool to study the adsorption behaviour of synthetic and biopolymers at the air–water interface. Biopolymers 1978, 17, 1759.
         | Ellipsometry as a tool to study the adsorption behaviour of synthetic and biopolymers at the air–water interface.Crossref | GoogleScholarGoogle Scholar |

[11]  M Hao, L Zhang, P Chen, Membrane Internalization Mechanisms and Design Strategies of Arginine-Rich Cell-Penetrating Peptides. Int J Mol Sci 2022, 23, 9038.
         | Membrane Internalization Mechanisms and Design Strategies of Arginine-Rich Cell-Penetrating Peptides.Crossref | GoogleScholarGoogle Scholar |

[12]  R Menacho-Melgar, JS Decker, JN Hennigan, MD Lynch, A review of lipidation in the development of advanced protein and peptide therapeutics. J Control Release 2019, 295, 1.
         | A review of lipidation in the development of advanced protein and peptide therapeutics.Crossref | GoogleScholarGoogle Scholar |

[13]  KJ Peterson-Kaufman, HS Haase, MD Boersma, EF Lee, WD Fairlie, SH Gellman, Residue-Based Preorganization of BH3-Derived α/β-Peptides: Modulating Affinity, Selectivity and Proteolytic Susceptibility in α-Helix Mimics. ACS Chem Biol 2015, 10, 1667.
         | Residue-Based Preorganization of BH3-Derived α/β-Peptides: Modulating Affinity, Selectivity and Proteolytic Susceptibility in α-Helix Mimics.Crossref | GoogleScholarGoogle Scholar |

[14]  MD Boersma, HS Haase, KJ Peterson-Kaufman, EF Lee, OB Clarke, PM Colman, BJ Smith, WS Horne, WD Fairlie, SH Gellman, Evaluation of diverse α/β-backbone patterns for functional α-helix mimicry: analogues of the Bim BH3 domain. J Am Chem Soc 2012, 134, 315.
         | Evaluation of diverse α/β-backbone patterns for functional α-helix mimicry: analogues of the Bim BH3 domain.Crossref | GoogleScholarGoogle Scholar |

[15]  JW Checco, SH Gellman, Targeting recognition surfaces on natural proteins with peptidic foldamers. Curr Opin Struct Biol 2016, 39, 96.
         | Targeting recognition surfaces on natural proteins with peptidic foldamers.Crossref | GoogleScholarGoogle Scholar |

[16]  JW Checco, SH Gellman, Iterative Non-proteinogenic Residue Incorporation Yields α/β-Peptides with a Helix–Loop–Helix Tertiary Structure and High Affinity for VEGF. Chembiochem 2017, 18, 291.
         | Iterative Non-proteinogenic Residue Incorporation Yields α/β-Peptides with a Helix–Loop–Helix Tertiary Structure and High Affinity for VEGF.Crossref | GoogleScholarGoogle Scholar |

[17]  JW Checco, DF Kreitler, NC Thomas, DG Belair, NJ Rettko, WL Murphy, KT Forest, SH Gellman, Targeting diverse protein–protein interaction interfaces with α/β-peptides derived from the Z-domain scaffold. Proc Natl Acad Sci U S A 2015, 112, 4552.
         | Targeting diverse protein–protein interaction interfaces with α/β-peptides derived from the Z-domain scaffold.Crossref | GoogleScholarGoogle Scholar |

[18]  WS Horne, MD Boersma, MA Windsor, SH Gellman, Sequence-based design of α/β-peptide foldamers that mimic BH3 domains. Angew Chem Int Ed 2008, 47, 2853.
         | Sequence-based design of α/β-peptide foldamers that mimic BH3 domains.Crossref | GoogleScholarGoogle Scholar |

[19]  LM Johnson, DE Mortenson, HG Yun, WS Horne, TJ Ketas, M Lu, JP Moore, SH Gellman, Enhancement of α-helix mimicry by an α/β-peptide foldamer via incorporation of a dense ionic side-chain array. J Am Chem Soc 2012, 134, 7317.
         | Enhancement of α-helix mimicry by an α/β-peptide foldamer via incorporation of a dense ionic side-chain array.Crossref | GoogleScholarGoogle Scholar |

[20]  WS Horne, JL Price, JL Keck, SH Gellman, Helix bundle quaternary structure from α/β-peptide foldamers. J Am Chem Soc 2007, 129, 4178.
         | Helix bundle quaternary structure from α/β-peptide foldamers.Crossref | GoogleScholarGoogle Scholar |

[21]  V Andreu-Fernández, A Genoves, TH Lee, M Stellato, F Lucantoni, M Orzáez, I Mingarro, MI Aguilar, E Pérez-Payá, Peptides derived from the transmembrane domain of Bcl-2 proteins as potential mitochondrial priming tools. ACS Chem Biol 2014, 9, 1799.
         | Peptides derived from the transmembrane domain of Bcl-2 proteins as potential mitochondrial priming tools.Crossref | GoogleScholarGoogle Scholar |

[22]  DJ Hirst, TH Lee, K Kulkarni, JA Wilce, MI Aguilar, The impact of cell-penetrating peptides on membrane bilayer structure during binding and insertion. Biochim Biophys Acta 2016, 1858, 1841.
         | The impact of cell-penetrating peptides on membrane bilayer structure during binding and insertion.Crossref | GoogleScholarGoogle Scholar |

[23]  DJ Hirst, TH Lee, MJ Swann, S Unabia, Y Park, KS Hahm, MI Aguilar, Effect of acyl chain structure and bilayer phase state on binding and penetration of a supported lipid bilayer by HPA3. Eur Biophys J 2011, 40, 503.
         | Effect of acyl chain structure and bilayer phase state on binding and penetration of a supported lipid bilayer by HPA3.Crossref | GoogleScholarGoogle Scholar |

[24]  TH Lee, DJ Hirst, MI Aguilar, New insights into the molecular mechanisms of biomembrane structural changes and interactions by optical biosensor technology. Biochim Biophys Acta 2015, 1848, 1868.
         | New insights into the molecular mechanisms of biomembrane structural changes and interactions by optical biosensor technology.Crossref | GoogleScholarGoogle Scholar |