Articles citing this paper
Assessment of a metaviromic dataset generated from nearshore Lake Michigan
Siobhan C. Watkins A D , Neil Kuehnle A , C. Anthony Ruggeri A , Kema Malki A , Katherine Bruder A , Jinan Elayyan A , Kristina Damisch A , Naushin Vahora A , Paul O’Malley A , Brieanne Ruggles-Sage A , Zachary Romer B and Catherine Putonti A B C
+ Author Affiliations
- Author Affiliations
A Department of Biology, Loyola University Chicago, 1032 W. Sheridan Road, Chicago, IL 60660, USA.
B Department of Computer Science, Loyola University Chicago, Chicago, IL 60611, USA.
C Bioinformatics Program, Loyola University Chicago, Chicago, IL 60660, USA.
D Corresponding author. Email: swatkins@luc.edu
Marine and Freshwater Research 67(11) 1700-1708 https://doi.org/10.1071/MF15172
Submitted: 30 April 2015 Accepted: 6 August 2015 Published: 4 November 2015
24 articles found in Crossref database.
Viruses as Winners in the Game of Life
Cobián Güemes Ana Georgina,
Youle Merry,
Cantú Vito Adrian,
Felts Ben,
Nulton James, Rohwer Forest
Annual Review of Virology. 2016 3(1). p.197
Exploring Viral Diversity in a Unique South African Soil Habitat
Segobola Jane,
Adriaenssens Evelien,
Tsekoa Tsepo,
Rashamuse Konanani, Cowan Don
Scientific Reports. 2018 8(1).
virMine: automated detection of viral sequences from complex metagenomic samples
Garretto Andrea,
Hatzopoulos Thomas, Putonti Catherine
PeerJ. 2019 7 p.e6695
Novel phage–host interactions and evolution as revealed by a cyanomyovirus isolated from an estuarine environment
Xu Yongle,
Zhang Rui,
Wang Nannan,
Cai Lanlan,
Tong Yigang,
Sun Qiang,
Chen Feng, Jiao Nianzhi
Environmental Microbiology. 2018 20(8). p.2974
The Geographic Structure of Viruses in the Cuatro Ciénegas Basin, a Unique Oasis in Northern Mexico, Reveals a Highly Diverse Population on a Small Geographic Scale
Taboada B.,
Isa P.,
Gutiérrez-Escolano A. L.,
del Ángel R. M.,
Ludert J. E.,
Vázquez N.,
Tapia-Palacios M. A.,
Chávez P.,
Garrido E.,
Espinosa A. C.,
Eguiarte L. E.,
López S.,
Souza V.,
Arias C. F., Drake Harold L.
Applied and Environmental Microbiology. 2018 84(11).
Climate-Endangered Arctic Epishelf Lake Harbors Viral Assemblages with Distinct Genetic Repertoires
Labbé Myriam,
Thaler Mary,
Pitot Thomas M.,
Rapp Josephine Z.,
Vincent Warwick F.,
Culley Alexander I., Buan Nicole R.
Applied and Environmental Microbiology. 2022 88(17).
Extreme Viral Partitioning in a Marine-Derived High Arctic Lake
Labbé Myriam,
Girard Catherine,
Vincent Warwick F.,
Culley Alexander I., Tamaki Hideyuki
mSphere. 2020 5(3).
Analysis of Different Size Fractions Provides a More Complete Perspective of Viral Diversity in a Freshwater Embayment
Palermo Christine N.,
Shea Dylan W.,
Short Steven M., Elkins Christopher A.
Applied and Environmental Microbiology. 2021 87(11).
Detecting contamination in viromes using ViromeQC
Zolfo Moreno,
Pinto Federica,
Asnicar Francesco,
Manghi Paolo,
Tett Adrian,
Bushman Frederic D., Segata Nicola
Nature Biotechnology. 2019 37(12). p.1408
Pseudomonas Diversity Within Urban Freshwaters
Batrich Mary,
Maskeri Laura,
Schubert Ryan,
Ho Brian,
Kohout Melanie,
Abdeljaber Malik,
Abuhasna Ahmed,
Kholoki Mutah,
Psihogios Penelope,
Razzaq Tahir,
Sawhney Samrita,
Siddiqui Salah,
Xoubi Eyad,
Cooper Alexandria,
Hatzopoulos Thomas, Putonti Catherine
Frontiers in Microbiology. 2019 10
Cuatro Ciénegas Ecology, Natural History and Microbiology (2018)
Next generation sequencing approaches to evaluate water and wastewater quality
Garner Emily,
Davis Benjamin C.,
Milligan Erin,
Blair Matthew Forrest,
Keenum Ishi,
Maile-Moskowitz Ayella,
Pan Jin,
Gnegy Mariah,
Liguori Krista,
Gupta Suraj,
Prussin Aaron J.,
Marr Linsey C.,
Heath Lenwood S.,
Vikesland Peter J.,
Zhang Liqing, Pruden Amy
Water Research. 2021 194 p.116907
The use of informativity in the development of robust viromics-based examinations
Watkins Siobhan C., Putonti Catherine
PeerJ. 2017 5 p.e3281
Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations
Chopyk Jessica,
Allard Sarah,
Nasko Daniel J.,
Bui Anthony,
Mongodin Emmanuel F., Sapkota Amy R.
Frontiers in Microbiology. 2018 9
Metagenomic Analysis of Virioplankton from the Pelagic Zone of Lake Baikal
Potapov Sergey A.,
Tikhonova Irina V.,
Krasnopeev Andrey Yu.,
Kabilov Marsel R.,
Tupikin Aleksey E.,
Chebunina Nadezhda S.,
Zhuchenko Natalia A., Belykh Olga I.
Viruses. 2019 11(11). p.991
Microbiome Analysis (2018)
Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
Butina Tatyana V.,
Bukin Yurij S.,
Petrushin Ivan S.,
Tupikin Alexey E.,
Kabilov Marsel R., Belikov Sergey I.
Microorganisms. 2021 9(4). p.760
Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium
Moon Kira,
Kang Ilnam,
Kim Suhyun,
Kim Sang-Jong, Cho Jang-Cheon
Scientific Reports. 2018 8(1).
Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond
Chopyk Jessica,
Nasko Daniel J.,
Allard Sarah,
Bui Anthony,
Pop Mihai,
Mongodin Emmanuel F., Sapkota Amy R.
Environmental Microbiome. 2020 15(1).
Pseudomonas PB1-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages
Watkins Siobhan,
Sible Emily, Putonti Catherine
Viruses. 2018 10(6). p.331
Virome analysis in lakes of the South Shetland Islands, Antarctica - 2020
Prado Tatiana,
Brandão Martha Lima,
Fumian Tulio Machado,
Freitas Lucas,
Chame Marcia,
Leomil Luciana,
Magalhães Maithê Gaspar Pontes,
Degrave Wim Maurits Sylvain,
Leite José Paulo Gagliardi, Miagostovich Marize Pereira
Science of The Total Environment. 2022 852 p.158537
Temporal dynamics of uncultured viruses: a new dimension in viral diversity
Arkhipova Ksenia,
Skvortsov Timofey,
Quinn John P,
McGrath John W,
Allen Christopher C R,
Dutilh Bas E,
McElarney Yvonne, Kulakov Leonid A
The ISME Journal. 2018 12(1). p.199
Multi-year molecular quantification and ‘omics analysis of Planktothrix-specific cyanophage sequences from Sandusky Bay, Lake Erie
McKindles Katelyn M.,
Manes Makayla,
Neudeck Michelle,
McKay Robert Michael, Bullerjahn George S.
Frontiers in Microbiology. 2023 14
Metaviromics coupled with phage-host identification to open the viral ‘black box’
Moon Kira, Cho Jang-Cheon
Journal of Microbiology. 2021 59(3). p.311
