Functional Plant Biology Functional Plant Biology Society
Plant function and evolutionary biology
RESEARCH ARTICLE

Grain yield and physiological traits of rice lines with the drought yield QTL qDTY12.1 showed different responses to drought and soil characteristics in upland environments

Amelia Henry A C , Shalabh Dixit A , Nimai P. Mandal B , M. S. Anantha B , Rolando Torres A and Arvind Kumar A
+ Author Affiliations
- Author Affiliations

A International Rice Research Institute, Los Baños, Laguna 4031, Philippines.

B Central Rainfed Upland Rice Research Station, Hazaribag, Jharkand 825 301, India.

C Corresponding author. Email: a.henry@irri.org

This paper originates from a presentation at the Interdrought IV Conference, 26 September 2013, Perth, Australia.

Functional Plant Biology 41(11) 1066-1077 https://doi.org/10.1071/FP13324
Submitted: 2 November 2013  Accepted: 14 April 2014   Published: 8 September 2014

Abstract

To improve yield in upland conditions, near-isogenic lines (NILs) of the major-effect drought yield quantitative trait locus qDTY12.1 in rice (Oryza sativa L.) were developed in the background of the upland variety Vandana. These NILs have shown greater water uptake a larger proportion of lateral roots, and higher transpiration efficiency under drought than Vandana, and one NIL (481-B) was selected as having the highest yield. In this study, the NILs were assessed in two greenhouse and 18 upland field trials for their response to drought and different soil textures. Performance of qDTY12.1 NILs was not affected by soil texture but showed a notable response to drought stress severity. The yield advantage of 481-B over Vandana was highest in field trials with intermittent drought stress, in which the mean trial yield was greater than 0.5 t ha–1, and in the least favourable well watered trial. The effects of qDTY12.1 on water uptake were most apparent under mild to moderate stress but not in very severe drought or well watered treatments, whereas the lateral root and transpiration efficiency responses were observed under a range of conditions. These results highlight the varying response of qDTY12.1 across upland environments and the complexity of multiple mechanisms acting together to confer an effect on rice yield under drought.

Additional keywords: carbon isotope discrimination, environment, Oryza sativa L., root.


References

Acuña TLB, Lafitte HR, Wade LJ (2008) Genotype × environment interactions for grain yield of upland rice backcrosslines in diverse hydrological environments. Field Crops Research 108, 117–125.
Genotype × environment interactions for grain yield of upland rice backcrosslines in diverse hydrological environments.CrossRef |

Bañoc DM, Yamauchi A, Kamoshita A, Wade LJ, Pardales JR (2000) Dry matter production and root system development of rice cultivars under fluctuating soil moisture. Plant Production Science 3, 197–207.
Dry matter production and root system development of rice cultivars under fluctuating soil moisture.CrossRef |

Bernier J, Kumar A, Venuprasad R, Spaner D, Atlin GN (2007) A large-effect QTL for grain yield under reproductive-stage drought stress in upland rice. Crop Science 47, 507–516.
A large-effect QTL for grain yield under reproductive-stage drought stress in upland rice.CrossRef |

Bernier J, Serraj R, Kumar A, Venuprasad R, Impa S, Gowda RPV, Oane R, Spaner D, Atlin G (2009a) The large-effect drought-resistance QTL qtl12.1 increases water uptake in upland rice. Field Crops Research 110, 139–146.
The large-effect drought-resistance QTL qtl12.1 increases water uptake in upland rice.CrossRef |

Bernier J, Kumar A, Venuprasad R, Spaner D, Verulkar S, Mandal NP, Sinha PK, Peeraju P, Dongre PR, Mahto RN, Atlin G (2009b) Characterization of the effect of a QTL for drought resistance in rice, qtl12.1, over a range of environments in the Philippines and eastern India. Euphytica 166, 207–217.
Characterization of the effect of a QTL for drought resistance in rice, qtl12.1, over a range of environments in the Philippines and eastern India.CrossRef |

Boonjung H, Fukai S (1996) Effects of soil water deficit at different growth stages of rice growth and yield under upland conditions. 1. Growth during drought. Field Crops Research 48, 37–45.
Effects of soil water deficit at different growth stages of rice growth and yield under upland conditions. 1. Growth during drought.CrossRef |

Cooper M, Rajatasereekul S, Immark S, Fukai S, Basnayake J (1999) Rainfed lowland rice breeding strategies for northeast Thailand. I. Genotypic variation and genotype × environment interactions for grain yield. Field Crops Research 64, 131–151.
Rainfed lowland rice breeding strategies for northeast Thailand. I. Genotypic variation and genotype × environment interactions for grain yield.CrossRef |

Dingkuhn M, Farquhar GD, De Datta SK, O’Toole JC (1991) Discrimination of 13C among upland rices having different water use efficiencies. Australian Journal of Agricultural Research 42, 1123–1131.
Discrimination of 13C among upland rices having different water use efficiencies.CrossRef | 1:CAS:528:DyaK38Xjslyj&md5=48fb8a32e413a0b369f8f4190cc511abCAS |

Farquhar GD, Ehleringer JR, Hubick KT (1989) Carbon isotope discrimination and photosynthesis. Annual Review of Plant Physiology and Plant Molecular Biology 40, 503–537.
Carbon isotope discrimination and photosynthesis.CrossRef | 1:CAS:528:DyaL1MXktlKmu70%3D&md5=1b7b578571b22881f7134e65a1c8f68dCAS |

Fukao T, Xiong L (2013) Genetic mechanisms conferring adaptation to submergence and drought in rice: simple or complex? Current Opinion in Plant Biology 16, 196–204.
Genetic mechanisms conferring adaptation to submergence and drought in rice: simple or complex?CrossRef | 1:CAS:528:DC%2BC3sXjsFCltrc%3D&md5=ca950534bc7b26b92c1c747a886fa83eCAS | 23453780PubMed |

Gowda VRP, Henry A, Yamauchi A, Shashidhar HE, Serraj R (2011) Root biology and breeding for drought avoidance in rice. Field Crops Research 122, 1–13.
Root biology and breeding for drought avoidance in rice.CrossRef |

Gowda VRP, Henry A, Vadez V, Shashidhar HE, Serraj R (2012) Water uptake dynamics under progressive drought stress in OryzaSNP panel rice accessions. Functional Plant Biology 39, 402–411.
Water uptake dynamics under progressive drought stress in OryzaSNP panel rice accessions.CrossRef |

Henry A, Gowda VRP, Torres RO, McNally KL, Serraj R (2011) Genetic variation in root architecture and drought response in Oryza sativa: rainfed lowland field studies of the OryzaSNP panel. Field Crops Research 120, 205–214.
Genetic variation in root architecture and drought response in Oryza sativa: rainfed lowland field studies of the OryzaSNP panel.CrossRef |

Impa SM, Nadaradjan S, Boominathan P, Shashidhar G, Bindumadhava H, Sheshshayee MS (2005) Carbon isotope discrimination accurately reflects variability in WUE measured at a whole plant level in rice. Crop Science 45, 2517–2522.
Carbon isotope discrimination accurately reflects variability in WUE measured at a whole plant level in rice.CrossRef | 1:CAS:528:DC%2BD2MXht1OktbvP&md5=5cd67b6568f2ca7994684a4f62768cd8CAS |

Kijoji AA, Nchimbi-Msolla S, Kanyeka ZL, Klassen SP, Serraj R, Henry A (2013) Water extraction and root traits in Oryza sativa × Oryza glaberrima introgression lines under different soil moisture regimes. Functional Plant Biology 40, 54–66.
Water extraction and root traits in Oryza sativa × Oryza glaberrima introgression lines under different soil moisture regimes.CrossRef |

Kondo M, Pablico PP, Aragones DV, Agbisit R, Abe J, Morita S, Courtois B (2003) Genotypic and environmental variations in root morphology in rice genotypes under upland field conditions. Plant and Soil 255, 189–200.
Genotypic and environmental variations in root morphology in rice genotypes under upland field conditions.CrossRef | 1:CAS:528:DC%2BD3sXotV2js7o%3D&md5=60cf64de3d5f881610ce73d03e92b3e0CAS |

Kondo M, Pablico PP, Aragones DV, Agbisit R (2004) Genotypic variations in carbon isotope discrimination, transpiration efficiency, and biomass production in rice as affected by soil water conditions and N. Plant and Soil 267, 165–177.
Genotypic variations in carbon isotope discrimination, transpiration efficiency, and biomass production in rice as affected by soil water conditions and N.CrossRef | 1:CAS:528:DC%2BD2MXht1Wkur4%3D&md5=574e1f2438a2b91d861bb2d91ed7efbaCAS |

Kumar A, Verulkar S, Dixit S, Chauhan B, Bernier J, Venuprasad R, Zhao D, Shrivastava MN (2009) Yield and yield-attributing traits of rice (Oryza sativa L.) under lowland drought and suitability of early vigor as a selection criterion. Field Crops Research 114, 99–107.
Yield and yield-attributing traits of rice (Oryza sativa L.) under lowland drought and suitability of early vigor as a selection criterion.CrossRef |

Lynch J, Van Beem JJ (1993) Growth and architecture of seedling roots of common bean genotypes. Crop Science 33, 1253–1257.
Growth and architecture of seedling roots of common bean genotypes.CrossRef |

Mandal NP, Sinha PK, Variar M, Shukla VD, Perraju P, Mehta A, Pathak AR, Dwivedi JL, Rathi SPS, Bhandarkar S, Singh BN, Singh DN, Panda S, Mishra NC, Singh YV, Pandya R, Singh MK, Sanger RBS, Bhatt JC, Sharma RK, Raman A, Kumar A, Atlin G (2010) Implications of genotype × input interactions in breeding superior genotypes for favorable and unfavorable rainfed upland environments. Field Crops Research 118, 135–144.
Implications of genotype × input interactions in breeding superior genotypes for favorable and unfavorable rainfed upland environments.CrossRef |

Mishra KK, Vikram P, Yadaw RB, Swamy BPM, Dixit S, Sta Cruz MT, Maturan P, Marker S, Kumar A (2013) qDTY12.1 : a locus with a consistent effect on grain yield under drought in rice. BMC Genetics 14, 12
qDTY12.1 : a locus with a consistent effect on grain yield under drought in rice.CrossRef | 23442150PubMed |

Puckridge DW, O’Toole J (1980) Dry matter and grain production of rice, using a line source sprinkler in drought studies. Field Crops Research 3, 303–319.
Dry matter and grain production of rice, using a line source sprinkler in drought studies.CrossRef |

Sinclair TR (2012) Is transpiration efficiency a viable plant trait in breeding for crop improvement? Functional Plant Biology 39, 359–365.
Is transpiration efficiency a viable plant trait in breeding for crop improvement?CrossRef |

Singh VP, Singh RK, Eds (2000) ‘Rainfed rice: a sourcebook of best practices and strategies in Eastern India.’ (International Rice Research Institute: Los Baños)

Sinha PK, Variar M, Singh CV, Prasad K, Singh RK (1994) A new upland rice variety ‘Vandana’ for Bihar plateau. Indian Farming 44, 1–3.

Suralta RR, Inukai Y, Yamauchi A (2008) Genotypic variations in responses of lateral root development to transient moisture stresses in rice cultivars. Plant Production Science 11, 324–335.
Genotypic variations in responses of lateral root development to transient moisture stresses in rice cultivars.CrossRef |

Suralta RR, Inukai Y, Yamauchi A (2010) Dry matter production in relation to root plastic development, oxygen transport and water uptake of rice under transient soil moisture stresses. Plant and Soil 332, 87–104.
Dry matter production in relation to root plastic development, oxygen transport and water uptake of rice under transient soil moisture stresses.CrossRef | 1:CAS:528:DC%2BC3cXntlGhu7o%3D&md5=86f69411010051dd6fcb48c3bebb46ecCAS |

Wade LJ, McLaren CG, Quintana L, Harnpichitvitaya D, Rajatasereekul S, Sarawgi AK, Kumar A, Ahmed HU, Sarwoto , Singh AK, Rodriguez R, Siopongco J, Sarkarung S (1999) Genotype by environment interactions across diverse rainfed lowland rice environments. Field Crops Research 64, 35–50.
Genotype by environment interactions across diverse rainfed lowland rice environments.CrossRef |

Widawsky DA, O’Toole JC (1996) Prioritizing the rice research agenda for eastern India. In ‘Rice research in Asia: progress and priorities’. (Eds RE Evenson, RW Herdt, M Hossain), pp. 109–130. (CAB International, Wallingford)

Zaman-Allah M, Jenkinson DM, Vadez V (2011) A conservative pattern of water use, rather than deep or profuse rooting, is critical for the terminal drought tolerance of chickpea. Journal of Experimental Botany 62, 4239–4252.
A conservative pattern of water use, rather than deep or profuse rooting, is critical for the terminal drought tolerance of chickpea.CrossRef | 1:CAS:528:DC%2BC3MXhtVeit7jJ&md5=18c999ca5c463a19fbaa50402c465e5aCAS | 21610017PubMed |

Zhu JM, Lynch JP (2004) The contribution of lateral rooting to phosphorus acquisition efficiency in maize (Zea mays) seedlings. Functional Plant Biology 31, 949–958.
The contribution of lateral rooting to phosphorus acquisition efficiency in maize (Zea mays) seedlings.CrossRef | 1:CAS:528:DC%2BD2cXosFSqu7k%3D&md5=93c543be8ad0143764cec8b3416de33fCAS |



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