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Protocols in ecological and environmental plant physiology


Functional Plant Biology publishes new and significant information on the functional biology of plants at all scales from the molecular through whole plant to community. More

Editor-in-Chief: Sergey Shabala


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Published online 29 May 2015
Novel insights into the Citrus sinensis nonhost response suggest photosynthesis decline, abiotic stress networks and secondary metabolism modifications 
Lucas D. Daurelio, M. Laura Tondo, M. Soledad Romero, Paz Merelo, Adriana A. Cortadi, Manuel Talón, Francisco R. Tadeo and Elena G. Orellano

Citrus species are one of the most important fruit crops worldwide but pathogen attacks cause significant losses in their production. With the aim of contributing to finding solutions, the fundamental defence mechanism known as the nonhost response was studied in sweet orange and the participation of novel features was determined. These results contribute to our overall comprehension of this defence strategy in nonmodel tree plants.

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Published online 28 May 2015
Spatial heterogeneity in stomatal features during leaf elongation: an analysis using Rosa hybrida 
Dimitrios Fanourakis, Ep Heuvelink and Susana M. P. Carvalho

Stomatal features are determined by examining an area that does not exceed 1 cm2. This study reveals a considerable within-leaf heterogeneity in these features, with implications in studying stomatal initiation or estimating stomatal conductance. We show that the sampling scheme for stomatal traits ought to be a function of the leaf developmental stage, the feature under study and the growth environment.

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Published online 28 May 2015
Photon flux density and temperature-dependent responses of photosynthesis and photosystem II performance of apple leaves grown in field conditions 
Dennis H. Greer

The interaction of light and leaf temperature on the photosynthetic process is important to understand how climate affects productivity. This study documents the interaction on photosynthesis but also the performance of PSII across different light and temperature conditions. Modelling the photosynthetic response has enhanced understanding of the photochemical and non-photochemical contributions to photosynthesis in different light and temperature conditions.

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Published online 26 May 2015
Interactive effect of biochar and plant growth-promoting bacterial endophytes on ameliorating salinity stress in maize 
Saqib Saleem Akhtar, Mathias Neumann Andersen, Muhammad Naveed, Zahir Ahmad Zahir and Fulai Liu

Salinity stress constraints plant growth and reduces crop yield. Incorporation of biochar and plant growth-promoting endophytic bacteria containing 1-aminocyclopropane-1-carboxylate deaminase and exopolysaccharide activity in the soil could mitigate salinity stress in maize either by decreasing sodium uptake or by maintaining nutrient balance. Therefore, inoculation of plants with endophytic bacterial strains along with biochar amendment could be an effective approach for sustaining crop production in salt-affected soils.

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Published online 25 May 2015
Cryptic crassulacean acid metabolism (CAM) in Jatropha curcas 
Klaus Winter and Joseph A. M. Holtum

Jatropha curcas (Euphorbiaceae) is a drought-tolerant shrub or small tree that is a candidate bioenergy feedstock. J. curcas exhibits features diagnostic of low-level crassulacean acid metabolism (CAM), a water-conserving mode of photosynthesis. Studies of plants with low-level CAM activity are key for our understanding of how plants have transitioned from C3 to CAM.

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Published online 20 May 2015
Heterogeneity of photosynthesis within leaves is associated with alteration of leaf structural features and leaf N content per leaf area in rice 
Dongliang Xiong, Tingting Yu, Xi Liu, Yong Li, Shaobing Peng and Jianliang Huang

Leaf photosynthesis, as a most important functional trait, is usually represented by point measurements, based on a hypothesis of photosynthetic rate is uniform within leaves. In this paper, we investigated the heterogeneity of photosynthesis within leaves in two rice cultivars. The results indicated that CO2 diffusion conductance as well as leaf nitrogen, Rubisco, and chlorophyll contents increased from base to apex; consequently, photosynthesis increased along leaves. The findings could provide knowledge complement in rice photosynthesis.

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Published online 18 May 2015
Sapwood allocation in tropical trees: a test of hypotheses 
Peter Schippers, Mart Vlam, Pieter A. Zuidema and Frank Sterck

Carbon allocation in tropical trees is a key process in determining the carbon sequestration of the forest. By combining a tree growth model and tree ring records we discovered that allocation with low priority to sapwood was the best candidate explaining our results. This new allocation assumption may greatly influence predicted carbon sequestration of tropical forests under climatic change.

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Published online 18 May 2015
Genetic suppression of plant development and chloroplast biogenesis via the Snowy Cotyledon 3 and Phytochrome B pathways 
Diep Ganguly, Peter Crisp, Klaus Harter, Barry J. Pogson and Verónica Albrecht-Borth

In this study, we used genetic approaches and transcriptome profiling to unravel the complex interaction of different developmental pathways required for chloroplast development in plants. The recently described snowy cotyledon 3 (sco3) Arabidopsis thaliana mutant as well as the well characterised Phytochrome B (phyB) mutant revealed a complex suppressive or additive genetically linked regulation of chloroplast development, flowering time and transcription regulation in the double mutant sco3–phyB.

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Published online 14 May 2015
A possible link between hydraulic properties and leaf habits in Hevea brasiliensis 
Jun-Wen Chen and Kun-Fang Cao

Rubber tree is an evergreen tree from the Amazon rainforest; however, we have never understood why it changes into a deciduous species in introduced ranges, such as the Xishuangbanna region, China. To analyse the reason for this change in leaf habit, a co-occurring native evergreen tree was selected as a comparison. This study found that seasonal drought is the main reason for leaf shedding in rubber tree in introduced ranges.

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Published online 14 May 2015
Variation potential induces decreased PSI damage and increased PSII damage under high external temperatures in pea 
Vladimir Sukhov, Lyubov Surova, Oksana Sherstneva, Albina Bushueva and Vladimir Vodeneev

In higher plants, local damage induces a unique electrical signal: variation potential, which influences numerous physiological processes; however, its role in plant life is not clear. We showed that variation potential decreases PSI damage, increases PSII damage and raises the resistance of the whole plant under heating. Thus variation potential can increase the probability of plant survival under high temperatures.

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Published online 04 May 2015
The decline in xylem flow to mango fruit at the end of its development is related to the appearance of embolism in the fruit pedicel 
Thibault Nordey, Mathieu Léchaudel and Michel Génard

Fruit water balance changes during the late growth stage in part due to xylem flow decrease. Our measurements on mango revealed that the decline in xylem flow was related to the decrease in the hydraulic conductivity of xylem vessels due to embolism. The xylem decrease in the later growth stage could affect fruit growth and fruit mineral composition.

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Published online 01 May 2015
Assessment of drought tolerance and its potential yield penalty in potato 
Heike Sprenger, Katharina Rudack, Christian Schudoma, Arne Neumann, Sylvia Seddig, Rolf Peters, Ellen Zuther, Joachim Kopka, Dirk K. Hincha, Dirk Walther and Karin Köhl

Reduced water availability for agriculture make potato a desirable crop due to its high calorie production per unit of water; however, the crop is sensitive to drought. A research project detected drought-tolerant cultivars among those bred for temperate climate. These cultivars will be used to identify marker-based strategies for the efficient breeding of drought-tolerant potatoes to reduce yield loss due to water shortage.

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Published online 16 April 2015
Dynamic carbon allocation into source and sink tissues determine within-plant differences in carbon isotope ratios 
Frederik Wegener, Wolfram Beyschlag and Christiane Werner

Plant organs of C3 plants differ in their C isotopic signature (δ13C) but the underlying mechanisms are still unclear. We induced different allocation strategies and found that the spatial δ13C variation within plants was strongly influenced by the life stage of the leaves. These results are important, as foliar δ13C is used in many fields of plant science (e.g. for estimating photosynthetic isotope fractionation).

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Published online 10 April 2015
In vivo epidermal UV-A absorbance is induced by sunlight and protects Soldanella alpina leaves from photoinhibition 
Constance Laureau, Sylvie Meyer, Xavier Baudin, Christophe Huignard and Peter Streb

High intensities of UV radiation and visible light are important stress factors affecting plants’ photosynthetic performance, particularly in the mountains. Protection from this stress is provided by UV-absorbing pigments in the epidermis of Soldanella alpina leaves and is induced by visible light. This UV shielding protects leaves from photodamage in their natural environment.

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Published online 10 April 2015
The role of oxidative stress in determining the level of viability of black poplar (Populus nigra) seeds stored at different temperatures 
Ewa Marzena Kalemba, Jan Suszka and Ewelina Ratajczak

Black poplar (Populus nigra L.) is one of the most threatened tree species in Europe and they produce seeds characterised by short longevity. Oxidative stress increases during seed storage and injures seed tissues resulting in a loss of viability, particularly at temperatures higher than -10°C. Successful storage of seeds might be prolonged when specific low temperature is applied that minimises oxidative stress effects.

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Published online 10 April 2015
Crosstalk among nitric oxide, calcium and reactive oxygen species during triterpenoid biosynthesis in Betula platyphylla 
Fansuo Zeng, Kun Liu, Sida Li and Yaguang Zhan

Crosstalk among NO, reactive oxygen species (ROS) and Ca2+ in tree species was not clear. The study showed that NO plays important roles in the synthesis and accumulation of triterpenoids in birch by regulating the intracellular ROS and Ca2+ signalling pathway. These results provide the theoretical basis and the technical support required for the use of triterpenoid biotechnology.

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Published online 10 April 2015
Photosynthetic characteristics and light energy conversions under different light environments in five tree species occupying dominant status at different stages of subtropical forest succession 
Qiang Zhang, Tai-Jie Zhang, Wah Soon Chow, Xin Xie, Yuan-Jun Chen and Chang-Lian Peng

How light drives the development of forest ecosystems is still not fully understood. The aim of this study is to reveal the mechanism driving subtropical forest succession along a light gradient. Our results indicate that photosynthetic capacity decreases along the successional axis and that late-successional species have more responsive energy dissipation capability to compensate for their inferior photosynthetic capacity.

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blank image Functional Plant Biology
Volume 42 Number 6 2015

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Descriptive Table of Contents 
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Novel chlorophylls and new directions in photosynthesis research 
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Yaqiong Li and Min Chen
pp. 493-501

Chlorophylls d and f are red-shifted chlorophylls based on their significantly red-shifted absorption bands compared with chlorophyll a. Understanding the molecular mechanism of photosynthesis driven by red-shifted chlorophylls is of global importance and will contribute to cutting-edge photosynthetic research. The current research status in related to the red-shifted chlorophylls is reviewed in this review.


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Towards a conceptual ABA ideotype in plant breeding for water limited environments 
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Abraham Blum
pp. 502-513

ABA is a plant hormone produced in plants under drought stress. On one hand, it causes the plant to conserve its water status; on the other hand, it reduces growth and productivity. This opinion review examines the available data on ABA and attempts to resolve this conundrum by formulating an appropriate crop plant phenotypic ABA ideotype for breeders to pursue within different dryland stress environments.


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Effects of different temperature regimes on flower development, microsporogenesis and fertility in bolting garlic (Allium sativum) 
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Einat Shemesh Mayer, Tomer Ben-Michael, Sagie Kimhi, Itzhak Forer, Haim D. Rabinowitch and Rina Kamenetsky
pp. 514-526

Infertility prevents genetics research and conventional breeding in garlic. Recent achievement of fertility restoration enables extensive studies of garlic florogenesis and causes for male sterility. We report on temperature effects on flower development and pollen quality in fertile and male-sterile garlic, and on the vulnerable phases of pollen formation. It is concluded that under unstable climatic conditions, agro-management modifications will facilitate breeding and seed production in this important crop.

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Comparative proteomic and physiological characterisation of two closely related rice genotypes with contrasting responses to salt stress 
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Seyed Abdollah Hosseini, Javad Gharechahi, Manzar Heidari, Parisa Koobaz, Shapour Abdollahi, Mehdi Mirzaei, Babak Nakhoda and Ghasem Hosseini Salekdeh
pp. 527-542

According to a two-phase growth response concept, genotypes with differing susceptibility to salinity usually develop distinct responses when excess salt accumulates in their tissues. In this study, two rice genotypes (IR29 and FL478) were exposed to salt stress until they showed distinct growth. Their physiology and proteome responses were analysed. The sensitivity of IR29 to salinity may be due to its inability to exclude salt, compartmentalise excess ions or maintain its photosynthetic apparatus in a healthy state under salt stress.

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Leaf green-white variegation is advantageous under N deprivation in Pelargonium×hortorum 
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Cyril Abadie, Marlène Lamothe, Caroline Mauve, Françoise Gilard and Guillaume Tcherkez
pp. 543-551

Growth and metabolism of green-white variegated and plain morphs of Pelargonium have been examined under nitrogen deficiency. Variegated plants performed better than non-variegated plants, owing to the remobilisation of nitrogenous compounds stored in leaf white areas. It is concluded that variegation is disadvantageous under non N-limited conditions due to the lower photosynthetic surface area, but is advantageous under nitrogen deprivation.

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Temperature responses of photosynthesis and respiration in a sub-Antarctic megaherb from Heard Island 
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Marcus Schortemeyer, John R. Evans, Dan Bruhn, Dana M. Bergstrom and Marilyn C. Ball
pp. 552-564

Climate warming may affect carbon gain and loss, with consequences for growth of cold climate species. Responses of photosynthesis and respiration to temperature were studied in Pringlea antiscorbutica R. Br. along an altitudinal gradient on sub-Antarctic Heard Island. The results showed greater importance of thermal acclimation of respiration than photosynthesis to maintenance of favourable carbon balances with increasing temperature range.


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Impact of elevated atmospheric humidity on anatomical and hydraulic traits of xylem in hybrid aspen 
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Anna Katarzyna Jasińska, Meeli Alber, Arvo Tullus, Märt Rahi and Arne Sellin
pp. 565-578

The Free Air Humidity Manipulation (FAHM) experiment offers unique possibilities to test trees’ acclimation capacity to increasing atmospheric humidity – a climate trend predicted for northern Europe. We investigated changes in wood anatomy and hydraulic conductivity in hybrid aspen; results showed moderate modifications in both the structure and functioning of xylem. Our results suggest that hybrid aspen is relatively insensitive to the changes in air humidity.


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Whole-plant respiration and its temperature sensitivity during progressive carbon starvation 
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Martijn Slot and Kaoru Kitajima
pp. 579-588

Carbon release from plant respiration increases with temperature. Although it is thought that low sugar concentrations limit the rate of this increase, this has not been tested at the whole-plant level. When we sugar-starved Ardisia crenata plants, respiration decreased but, surprisingly, the sensitivity of respiration to warming increased. These results highlight the complexity of the controls over plant respiration, especially at the whole-plant level.


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Comparative expression profiling of three early inflorescence stages of oil palm indicates that vegetative to reproductive phase transition of meristem is regulated by sugar balance 
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Walter Ajambang, Sintho W. Ardie, Hugo Volkaert, Georges F. Ngando-Ebongue and Sudarsono Sudarsono
pp. 589-598

In some cases, induction of male flower inflorescences in oil palm is difficult to accomplish. Investigation to explore part of the possible ways to induce male flower inflorescences from Pisifera oil palm and understanding the molecular processes associated with it have been investigated and answered. The findings may be important in the management of commercial oil palm production especially under changing climate conditions.


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These articles have been peer reviewed and accepted for publication. They are still in production and have not been edited, so may differ from the final published form.

    FP15060  Accepted 25 May 2015
    What drives fruit growth?
    Robert Okello, Ep Heuvelink, Pieter Devisser, Paul Struik, Leo Marcelis

    FP15019  Accepted 24 May 2015
    Ultrastructural and biochemical changes induced by salt stress in Jatropha curcas seeds during germination and seedling development
    Enéas Gomes Filho, Nara Lídia Alencar, Cibelle Gadelha, Maria Gallão, Mary Anne Dolder, José Prisco

    FP15024  Accepted 07 May 2015
    High resolution imaging of maize (Zea maize) leaf temperature in the field: the key role of the Region of Interest
    Taha Jerbi, Nathalie Wuyts, Maria Angela Cane, Philippe-Francois Faux, Xavier Draye

    FP14279  Accepted 04 May 2015
    Optimum temperature for floral terpene emissions tracks the mean temperature of the flowering season
    Gerard Farré-Armengol, Iolanda Filella, Joan Llusià, Ulo Niinemets, Josep Penuelas

    FP14256  Accepted 04 May 2015
    Rising temperature may negate the stimulatory effect of rising CO2 on growth and physiology of Wollemi pine (Wollemia nobilis)
    Jim Lewis, Nathan Phillips, Barry Logan, Renee Smith, Iker Aranjuelo, Steve Clarke, Catherine Offord, Allison Frith, Margaret Barbour, Travis Huxman, David Tissue

    FP14356  Accepted 29 April 2015
    Selectable marker-free co-expression of Nicotiana rustica CN and Nicotiana tabacum HAK1 genes improves resistance to tobacco mosaic virus in tobacco
    Lijun Qin, Dan Zhao, Yi Zhang, Degang Zhao

    FP15045  Accepted 27 April 2015
    Alkaloid production and capacity for methyljasmonate induction by hairy roots of two species in Tribe Anthocercideae, family Solanaceae.
    Suzanne Ryan, Kathleen DeBoer, John Hamill

    FP15002  Accepted 21 April 2015
    Pilar Cendrero Mateo, A. Elizabete Carmo-Silva, Albert Porcar-Castell, Erik Hamerlynck, Shirley Papuga, Susan Moran


The Most Read ranking is based on the number of downloads from the CSIRO PUBLISHING website of articles published in the previous 12 months. Usage statistics are updated daily.

Rank Paper Details
1. Published 13 February 2015
The structure and activity of nodulation-suppressing CLE peptide hormones of legumes

April H. Hastwell, Peter M. Gresshoff and Brett J. Ferguson

2. Published 30 September 2014
Genomics for drought resistance – getting down to earth

Abraham Blum

3. Published 14 August 2014
Crop yield components – photoassimilate supply- or utilisation limited-organ development?

John W. Patrick and Kim Colyvas

4. Published 7 May 2014
Variation in mesophyll conductance among Australian wheat genotypes

Eisrat Jahan, Jeffrey S. Amthor, Graham D. Farquhar, Richard Trethowan and Margaret M. Barbour

5. Published 30 September 2014
Mucilage exudation facilitates root water uptake in dry soils

Mutez A. Ahmed, Eva Kroener, Maire Holz, Mohsen Zarebanadkouki and Andrea Carminati

6. Published 30 September 2014
Strategies to increase the yield and yield stability of crops under drought – are we making progress?

Neil C. Turner, Abraham Blum, Mehmet Cakir, Pasquale Steduto, Roberto Tuberosa and Neil Young

7. Published 14 July 2014
Photosynthesis–nitrogen relationships in tropical forest tree species as affected by soil phosphorus availability: a controlled environment study

Keith J. Bloomfield, Graham D. Farquhar and Jon Lloyd

8. Published 14 August 2014
When smaller is better: leaf hydraulic conductance and drought vulnerability correlate to leaf size and venation density across four Coffea arabica genotypes

Andrea Nardini, Eele Õunapuu-Pikas and Tadeja Savi

9. Published 30 September 2014
Two potato (Solanum tuberosum) varieties differ in drought tolerance due to differences in root growth at depth

Jaime Puértolas, Carlos Ballester, E. David Elphinstone and Ian C. Dodd

10. Published 14 August 2014
Review on shape formation in epidermal pavement cells of the Arabidopsis leaf

Eveline Jacques, Jean-Pierre Verbelen and Kris Vissenberg

11. Published 7 May 2014
Environmental stress activation of plant long-terminal repeat retrotransposons

Ahmed M. Alzohairy, Jamal S. M. Sabir, Gábor Gyulai, Rania A. A. Younis, Robert K. Jansen and Ahmed Bahieldin

12. Published 30 September 2014
Individual and combined effects of transient drought and heat stress on carbon assimilation and seed filling in chickpea

Rashmi Awasthi, Neeru Kaushal, Vincent Vadez, Neil C. Turner, Jens Berger, Kadambot H. M. Siddique and Harsh Nayyar

13. Published 30 September 2014
Partial root zone drying exerts different physiological responses on field-grown grapevine (Vitis vinifera cv. Monastrell) in comparison to regulated deficit irrigation

Pascual Romero, Juan Gabriel Pérez-Pérez, Francisco M. del Amor, Adrián Martinez-Cutillas, Ian C. Dodd and Pablo Botía

14. Published 7 January 2015
High night temperature induces contrasting responses for spikelet fertility, spikelet tissue temperature, flowering characteristics and grain quality in rice

Onoriode Coast, Richard H. Ellis, Alistair J. Murdoch, Cherryl Quiñones and Krishna S. V. Jagadish

15. Published 7 May 2014
Spring barley shows dynamic compensatory root and shoot growth responses when exposed to localised soil compaction and fertilisation

Johannes Pfeifer, Marc Faget, Achim Walter, Stephan Blossfeld, Fabio Fiorani, Ulrich Schurr and Kerstin A. Nagel

16. Published 30 September 2014
Quantitative trait locus mapping of the transpiration ratio related to preflowering drought tolerance in sorghum (Sorghum bicolor)

Mohankumar H. Kapanigowda, William A. Payne, William L. Rooney, John E. Mullet and Maria Balota

17. Published 30 September 2014
Phenotyping novel stay-green traits to capture genetic variation in senescence dynamics

John T. Christopher, Mathieu Veyradier, Andrew K. Borrell, Greg Harvey, Susan Fletcher and Karine Chenu

18. Published 30 September 2014
Physiological basis of salt stress tolerance in rice expressing the antiapoptotic gene SfIAP

Thi My Linh Hoang, Brett Williams, Harjeet Khanna, James Dale and Sagadevan G. Mundree

19. Published 14 August 2014
Responses of rice to Fe2+ in aerated and stagnant conditions: growth, root porosity and radial oxygen loss barrier

Jenjira Mongon, Dennis Konnerup, Timothy D. Colmer and Benjavan Rerkasem

20. Published 17 June 2014
Seed storage albumins: biosynthesis, trafficking and structures

Joshua S. Mylne, Ikuko Hara-Nishimura and K. Johan Rosengren

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